IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v15y2024i1d10.1038_s41467-023-44073-6.html
   My bibliography  Save this article

Biotic homogenization, lower soil fungal diversity and fewer rare taxa in arable soils across Europe

Author

Listed:
  • Samiran Banerjee

    (North Dakota State University
    Plant-Soil Interactions Group)

  • Cheng Zhao

    (ETH Zurich, Institute for Environmental Decisions)

  • Gina Garland

    (Plant-Soil Interactions Group)

  • Anna Edlinger

    (Plant-Soil Interactions Group
    Wageningen University & Research)

  • Pablo García-Palacios

    (Consejo Superior de Investigaciones Científicas
    University of Zurich, Department of Plant and Microbial Biology)

  • Sana Romdhane

    (University Bourgogne Franche Comte, INRAE, Institut Agro Dijon)

  • Florine Degrune

    (Institute of Biology)

  • David S. Pescador

    (Universidad Complutense de Madrid
    Universidad Rey Juan Carlos)

  • Chantal Herzog

    (Plant-Soil Interactions Group)

  • Lennel A. Camuy-Velez

    (North Dakota State University)

  • Jordi Bascompte

    (University of Zurich, Department of Evolutionary Biology and Environmental Studies)

  • Sara Hallin

    (Swedish University of Agricultural Sciences, Department of Forest Mycology and Plant Pathology)

  • Laurent Philippot

    (University Bourgogne Franche Comte, INRAE, Institut Agro Dijon)

  • Fernando T. Maestre

    (Universidad de Alicante
    Universidad de Alicante)

  • Matthias C. Rillig

    (Institute of Biology
    Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB))

  • Marcel G. A. Heijden

    (Plant-Soil Interactions Group
    University of Zurich, Department of Plant and Microbial Biology)

Abstract

Soil fungi are a key constituent of global biodiversity and play a pivotal role in agroecosystems. How arable farming affects soil fungal biogeography and whether it has a disproportional impact on rare taxa is poorly understood. Here, we used the high-resolution PacBio Sequel targeting the entire ITS region to investigate the distribution of soil fungi in 217 sites across a 3000 km gradient in Europe. We found a consistently lower diversity of fungi in arable lands than grasslands, with geographic locations significantly impacting fungal community structures. Prevalent fungal groups became even more abundant, whereas rare groups became fewer or absent in arable lands, suggesting a biotic homogenization due to arable farming. The rare fungal groups were narrowly distributed and more common in grasslands. Our findings suggest that rare soil fungi are disproportionally affected by arable farming, and sustainable farming practices should protect rare taxa and the ecosystem services they support.

Suggested Citation

  • Samiran Banerjee & Cheng Zhao & Gina Garland & Anna Edlinger & Pablo García-Palacios & Sana Romdhane & Florine Degrune & David S. Pescador & Chantal Herzog & Lennel A. Camuy-Velez & Jordi Bascompte & , 2024. "Biotic homogenization, lower soil fungal diversity and fewer rare taxa in arable soils across Europe," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-023-44073-6
    DOI: 10.1038/s41467-023-44073-6
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-023-44073-6
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-023-44073-6?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Maëva Labouyrie & Cristiano Ballabio & Ferran Romero & Panos Panagos & Arwyn Jones & Marc W. Schmid & Vladimir Mikryukov & Olesya Dulya & Leho Tedersoo & Mohammad Bahram & Emanuele Lugato & Marcel G. , 2023. "Patterns in soil microbial diversity across Europe," Nature Communications, Nature, vol. 14(1), pages 1-21, December.
    2. Norman Myers & Russell A. Mittermeier & Cristina G. Mittermeier & Gustavo A. B. da Fonseca & Jennifer Kent, 2000. "Biodiversity hotspots for conservation priorities," Nature, Nature, vol. 403(6772), pages 853-858, February.
    3. Martin M. Gossner & Thomas M. Lewinsohn & Tiemo Kahl & Fabrice Grassein & Steffen Boch & Daniel Prati & Klaus Birkhofer & Swen C. Renner & Johannes Sikorski & Tesfaye Wubet & Hartmut Arndt & Vanessa B, 2016. "Land-use intensification causes multitrophic homogenization of grassland communities," Nature, Nature, vol. 540(7632), pages 266-269, December.
    4. Eleonora Egidi & Manuel Delgado-Baquerizo & Jonathan M. Plett & Juntao Wang & David J. Eldridge & Richard D. Bardgett & Fernando T. Maestre & Brajesh K. Singh, 2019. "A few Ascomycota taxa dominate soil fungal communities worldwide," Nature Communications, Nature, vol. 10(1), pages 1-9, December.
    5. Carlos A. Guerra & Miguel Berdugo & David J. Eldridge & Nico Eisenhauer & Brajesh K. Singh & Haiying Cui & Sebastian Abades & Fernando D. Alfaro & Adebola R. Bamigboye & Felipe Bastida & José L. Blanc, 2022. "Global hotspots for soil nature conservation," Nature, Nature, vol. 610(7933), pages 693-698, October.
    6. Maëva Labouyrie & Cristiano Ballabio & Ferran Romero & Panos Panagos & Arwyn Jones & Marc W. Schmid & Vladimir Mikryukov & Olesya Dulya & Leho Tedersoo & Mohammad Bahram & Emanuele Lugato & Marcel G. , 2023. "Publisher Correction: Patterns in soil microbial diversity across Europe," Nature Communications, Nature, vol. 14(1), pages 1-1, December.
    7. T. Helgason & T. J. Daniell & R. Husband & A. H. Fitter & J. P. W. Young, 1998. "Ploughing up the wood-wide web?," Nature, Nature, vol. 394(6692), pages 431-431, July.
    8. Mohammad Bahram & Falk Hildebrand & Sofia K. Forslund & Jennifer L. Anderson & Nadejda A. Soudzilovskaia & Peter M. Bodegom & Johan Bengtsson-Palme & Sten Anslan & Luis Pedro Coelho & Helery Harend & , 2018. "Structure and function of the global topsoil microbiome," Nature, Nature, vol. 560(7717), pages 233-237, August.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Zi-Teng Liu & Rui-Ao Ma & Dong Zhu & Konstantinos T. Konstantinidis & Yong-Guan Zhu & Si-Yu Zhang, 2024. "Organic fertilization co-selects genetically linked antibiotic and metal(loid) resistance genes in global soil microbiome," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    2. Valeria Esther Álvarez & Verónica Andrea El Mujtar & Joana Falcão Salles & Xiu Jia & Elisa Castán & Andrea Gabriela Cardozo & Pablo Adrián Tittonell, 2024. "Micro-Environmental Variation in Soil Microbial Biodiversity in Forest Frontier Ecosystems—Implications for Sustainability Assessments," Sustainability, MDPI, vol. 16(3), pages 1-26, February.
    3. Cong Wang & Qing-Yi Yu & Niu-Niu Ji & Yong Zheng & John W. Taylor & Liang-Dong Guo & Cheng Gao, 2023. "Bacterial genome size and gene functional diversity negatively correlate with taxonomic diversity along a pH gradient," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    4. de la Riva, Enrique G. & Ulrich, Werner & Batáry, Péter & Baudry, Julia & Beaumelle, Léa & Bucher, Roman & Čerevková, Andrea & Felipe-Lucia, María R. & Gallé, Róbert & Kesse-Guyot, Emmanuelle & Rembia, 2023. "From functional diversity to human well-being: A conceptual framework for agroecosystem sustainability," Agricultural Systems, Elsevier, vol. 208(C).
    5. Zhu, Jinjin & Niu, Wenquan & Zhang, Zhenhua & Siddique, Kadambot H.M. & Dan Sun, & Yang, Runya, 2022. "Distinct roles for soil bacterial and fungal communities associated with the availability of carbon and phosphorus under aerated drip irrigation," Agricultural Water Management, Elsevier, vol. 274(C).
    6. Ziheng Peng & Xun Qian & Yu Liu & Xiaomeng Li & Hang Gao & Yining An & Jiejun Qi & Lan Jiang & Yiran Zhang & Shi Chen & Haibo Pan & Beibei Chen & Chunling Liang & Marcel G. A. Heijden & Gehong Wei & S, 2024. "Land conversion to agriculture induces taxonomic homogenization of soil microbial communities globally," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    7. Laxmi D. Bhatta & Sunita Chaudhary & Anju Pandit & Himlal Baral & Partha J. Das & Nigel E. Stork, 2016. "Ecosystem Service Changes and Livelihood Impacts in the Maguri-Motapung Wetlands of Assam, India," Land, MDPI, vol. 5(2), pages 1-14, June.
    8. P. Wang & J.J. Zhang & B. Shu & R.X. Xia, 2012. "Arbuscular mycorrhizal fungi associated with citrus orchards under different types of soil management, southern China," Plant, Soil and Environment, Czech Academy of Agricultural Sciences, vol. 58(7), pages 302-308.
    9. Caviedes, Julián & Ibarra, José Tomás & Calvet-Mir, Laura & Álvarez-Fernández, Santiago & Junqueira, André Braga, 2024. "Indigenous and local knowledge on social-ecological changes is positively associated with livelihood resilience in a Globally Important Agricultural Heritage System," Agricultural Systems, Elsevier, vol. 216(C).
    10. Maeda, Eduardo Eiji & Clark, Barnaby J.F. & Pellikka, Petri & Siljander, Mika, 2010. "Modelling agricultural expansion in Kenya's Eastern Arc Mountains biodiversity hotspot," Agricultural Systems, Elsevier, vol. 103(9), pages 609-620, November.
    11. Chomitz, Kenneth M. & Thomas, Timothy S. & Brandão, Antônio Salazar P., 2005. "The economic and environmental impact of trade in forest reserve obligations: a simulation analysis of options for dealing with habitat heterogeneity," Revista de Economia e Sociologia Rural (RESR), Sociedade Brasileira de Economia e Sociologia Rural, vol. 43(4), January.
    12. Elisa Barbour & Lara Kueppers, 2012. "Conservation and management of ecological systems in a changing California," Climatic Change, Springer, vol. 111(1), pages 135-163, March.
    13. van der Hoff, Richard & Nascimento, Nathália & Fabrício-Neto, Ailton & Jaramillo-Giraldo, Carolina & Ambrosio, Geanderson & Arieira, Julia & Afonso Nobre, Carlos & Rajão, Raoni, 2022. "Policy-oriented ecosystem services research on tropical forests in South America: A systematic literature review," Ecosystem Services, Elsevier, vol. 56(C).
    14. Brendan Fisher & Stephen Polasky & Thomas Sterner, 2011. "Conservation and Human Welfare: Economic Analysis of Ecosystem Services," Environmental & Resource Economics, Springer;European Association of Environmental and Resource Economists, vol. 48(2), pages 151-159, February.
    15. Pütz, S. & Groeneveld, J. & Alves, L.F. & Metzger, J.P. & Huth, A., 2011. "Fragmentation drives tropical forest fragments to early successional states: A modelling study for Brazilian Atlantic forests," Ecological Modelling, Elsevier, vol. 222(12), pages 1986-1997.
    16. Stephanie D. Maier & Jan Paul Lindner & Javier Francisco, 2019. "Conceptual Framework for Biodiversity Assessments in Global Value Chains," Sustainability, MDPI, vol. 11(7), pages 1-34, March.
    17. Sehgal, Shaina & Babu, Suresh, 2021. "Economic Transformation of the Nicobar Islands Post-tsunami: A Material Import–Export Analysis," Ecology, Economy and Society - the INSEE Journal, Indian Society of Ecological Economics (INSEE), vol. 4(02), July.
    18. Poonam Tripathi & Mukund Dev Behera & Partha Sarathi Roy, 2017. "Optimized grid representation of plant species richness in India—Utility of an existing national database in integrated ecological analysis," PLOS ONE, Public Library of Science, vol. 12(3), pages 1-13, March.
    19. Davis, Katrina & Pannell, David J. & Kragt, Marit & Gelcich, Stefan & Schilizzi, Steven, 2014. "Accounting for enforcement is essential to improve the spatial allocation of marine restricted-use zoning systems," Working Papers 195718, University of Western Australia, School of Agricultural and Resource Economics.
    20. Juliana Silveira dos Santos & Fausto Miziara & Hayla da Silva Fernandes & Renato Cezar Miranda & Rosane Garcia Collevatti, 2021. "Technification in Dairy Farms May Reconcile Habitat Conservation in a Brazilian Savanna Region," Sustainability, MDPI, vol. 13(10), pages 1-15, May.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-023-44073-6. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.