IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v14y2023i1d10.1038_s41467-023-41381-9.html
   My bibliography  Save this article

Pharmacological inhibition of TBK1/IKKε blunts immunopathology in a murine model of SARS-CoV-2 infection

Author

Listed:
  • Tomalika R. Ullah

    (Hudson Institute of Medical Research
    Monash University)

  • Matt D. Johansen

    (Centenary Institute and University of Technology Sydney, Faculty of Science, School of Life Sciences)

  • Katherine R. Balka

    (Monash Biomedicine Discovery Institute, Monash University)

  • Rebecca L. Ambrose

    (Hudson Institute of Medical Research
    Monash University)

  • Linden J. Gearing

    (Hudson Institute of Medical Research
    Monash University)

  • James Roest

    (St. Vincent’s Institute of Medical Research)

  • Julian P. Vivian

    (St. Vincent’s Institute of Medical Research
    The University of Melbourne)

  • Sunil Sapkota

    (Hudson Institute of Medical Research
    Monash University)

  • W. Samantha N. Jayasekara

    (Hudson Institute of Medical Research
    Monash University)

  • Daniel S. Wenholz

    (Noxopharm Limited
    UNSW Sydney)

  • Vina R. Aldilla

    (UNSW Sydney)

  • Jun Zeng

    (MedChemSoft Solutions)

  • Stefan Miemczyk

    (Centenary Institute and University of Technology Sydney, Faculty of Science, School of Life Sciences)

  • Duc H. Nguyen

    (Centenary Institute and University of Technology Sydney, Faculty of Science, School of Life Sciences)

  • Nicole G. Hansbro

    (Centenary Institute and University of Technology Sydney, Faculty of Science, School of Life Sciences)

  • Rajan Venkatraman

    (Monash Biomedicine Discovery Institute, Monash University)

  • Jung Hee Kang

    (Monash Biomedicine Discovery Institute, Monash University)

  • Ee Shan Pang

    (Monash Biomedicine Discovery Institute, Monash University)

  • Belinda J. Thomas

    (Hudson Institute of Medical Research
    Monash University
    Monash Medical Centre)

  • Arwaf S. Alharbi

    (Hudson Institute of Medical Research
    Monash University
    Taif University)

  • Refaya Rezwan

    (Hudson Institute of Medical Research
    Monash University)

  • Meredith O’Keeffe

    (Monash Biomedicine Discovery Institute, Monash University)

  • William A. Donald

    (UNSW Sydney)

  • Julia I. Ellyard

    (Australian National University
    Australian National University)

  • Wilson Wong

    (Hudson Institute of Medical Research
    Monash University
    Hudson Institute of Medical Research)

  • Naresh Kumar

    (UNSW Sydney)

  • Benjamin T. Kile

    (Monash Biomedicine Discovery Institute, Monash University
    University of Adelaide)

  • Carola G. Vinuesa

    (Australian National University
    Australian National University
    Francis Crick Institute)

  • Graham E. Kelly

    (Noxopharm Limited)

  • Olivier F. Laczka

    (Noxopharm Limited)

  • Philip M. Hansbro

    (Centenary Institute and University of Technology Sydney, Faculty of Science, School of Life Sciences)

  • Dominic De Nardo

    (Monash Biomedicine Discovery Institute, Monash University)

  • Michael P. Gantier

    (Hudson Institute of Medical Research
    Monash University)

Abstract

TANK-binding kinase 1 (TBK1) is a key signalling component in the production of type-I interferons, which have essential antiviral activities, including against SARS-CoV-2. TBK1, and its homologue IκB kinase-ε (IKKε), can also induce pro-inflammatory responses that contribute to pathogen clearance. While initially protective, sustained engagement of type-I interferons is associated with damaging hyper-inflammation found in severe COVID-19 patients. The contribution of TBK1/IKKε signalling to these responses is unknown. Here we find that the small molecule idronoxil inhibits TBK1/IKKε signalling through destabilisation of TBK1/IKKε protein complexes. Treatment with idronoxil, or the small molecule inhibitor MRT67307, suppresses TBK1/IKKε signalling and attenuates cellular and molecular lung inflammation in SARS-CoV-2-challenged mice. Our findings additionally demonstrate that engagement of STING is not the major driver of these inflammatory responses and establish a critical role for TBK1/IKKε signalling in SARS-CoV-2 hyper-inflammation.

Suggested Citation

  • Tomalika R. Ullah & Matt D. Johansen & Katherine R. Balka & Rebecca L. Ambrose & Linden J. Gearing & James Roest & Julian P. Vivian & Sunil Sapkota & W. Samantha N. Jayasekara & Daniel S. Wenholz & Vi, 2023. "Pharmacological inhibition of TBK1/IKKε blunts immunopathology in a murine model of SARS-CoV-2 infection," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-41381-9
    DOI: 10.1038/s41467-023-41381-9
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-023-41381-9
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-023-41381-9?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Baoyu Zhao & Fenglei Du & Pengbiao Xu & Chang Shu & Banumathi Sankaran & Samantha L. Bell & Mengmeng Liu & Yuanjiu Lei & Xinsheng Gao & Xiaofeng Fu & Fanxiu Zhu & Yang Liu & Arthur Laganowsky & Xueyun, 2019. "A conserved PLPLRT/SD motif of STING mediates the recruitment and activation of TBK1," Nature, Nature, vol. 569(7758), pages 718-722, May.
    2. Conggang Zhang & Guijun Shang & Xiang Gui & Xuewu Zhang & Xiao-chen Bai & Zhijian J. Chen, 2019. "Structural basis of STING binding with and phosphorylation by TBK1," Nature, Nature, vol. 567(7748), pages 394-398, March.
    3. Andrea Ablasser & Marion Goldeck & Taner Cavlar & Tobias Deimling & Gregor Witte & Ingo Röhl & Karl-Peter Hopfner & Janos Ludwig & Veit Hornung, 2013. "cGAS produces a 2′-5′-linked cyclic dinucleotide second messenger that activates STING," Nature, Nature, vol. 498(7454), pages 380-384, June.
    4. Alexandra Grubman & Xin Yi Choo & Gabriel Chew & John F. Ouyang & Guizhi Sun & Nathan P. Croft & Fernando J. Rossello & Rebecca Simmons & Sam Buckberry & Dulce Vargas Landin & Jahnvi Pflueger & Teresa, 2021. "Transcriptional signature in microglia associated with Aβ plaque phagocytosis," Nature Communications, Nature, vol. 12(1), pages 1-22, December.
    5. Andrea Ablasser & Jonathan L. Schmid-Burgk & Inga Hemmerling & Gabor L. Horvath & Tobias Schmidt & Eicke Latz & Veit Hornung, 2013. "Cell intrinsic immunity spreads to bystander cells via the intercellular transfer of cGAMP," Nature, Nature, vol. 503(7477), pages 530-534, November.
    6. Jeremy Di Domizio & Muhammet F. Gulen & Fanny Saidoune & Vivek V. Thacker & Ahmad Yatim & Kunal Sharma & Théo Nass & Emmanuella Guenova & Martin Schaller & Curdin Conrad & Christine Goepfert & Laurenc, 2022. "The cGAS–STING pathway drives type I IFN immunopathology in COVID-19," Nature, Nature, vol. 603(7899), pages 145-151, March.
    7. Leonhard X. Heinz & JangEun Lee & Utkarsh Kapoor & Felix Kartnig & Vitaly Sedlyarov & Konstantinos Papakostas & Adrian César-Razquin & Patrick Essletzbichler & Ulrich Goldmann & Adrijana Stefanovic & , 2020. "TASL is the SLC15A4-associated adaptor for IRF5 activation by TLR7–9," Nature, Nature, vol. 581(7808), pages 316-322, May.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Xudong Chen & Min Xie & Sensen Zhang & Marta Monguió-Tortajada & Jian Yin & Chang Liu & Youqi Zhang & Maeva Delacrétaz & Mingyue Song & Yixue Wang & Lin Dong & Qiang Ding & Boda Zhou & Xiaolin Tian & , 2023. "Structural basis for recruitment of TASL by SLC15A4 in human endolysosomal TLR signaling," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    2. Remzi Onur Eren & Göksu Gökberk Kaya & Robin Schwarzer & Manolis Pasparakis, 2024. "IKKε and TBK1 prevent RIPK1 dependent and independent inflammation," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
    3. Wei-Wei Luo & Zhen Tong & Pan Cao & Fu-Bing Wang & Ying Liu & Zhou-Qin Zheng & Su-Yun Wang & Shu Li & Yan-Yi Wang, 2022. "Transcription-independent regulation of STING activation and innate immune responses by IRF8 in monocytes," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
    4. Haruka Kemmoku & Kanoko Takahashi & Kojiro Mukai & Toshiki Mori & Koichiro M. Hirosawa & Fumika Kiku & Yasunori Uchida & Yoshihiko Kuchitsu & Yu Nishioka & Masaaki Sawa & Takuma Kishimoto & Kazuma Tan, 2024. "Single-molecule localization microscopy reveals STING clustering at the trans-Golgi network through palmitoylation-dependent accumulation of cholesterol," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
    5. Yaling Dou & Rui Chen & Siyao Liu & Yi-Tsang Lee & Ji Jing & Xiaoxuan Liu & Yuepeng Ke & Rui Wang & Yubin Zhou & Yun Huang, 2023. "Optogenetic engineering of STING signaling allows remote immunomodulation to enhance cancer immunotherapy," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
    6. Jing Liu & Xia Bu & Chen Chu & Xiaoming Dai & John M. Asara & Piotr Sicinski & Gordon J. Freeman & Wenyi Wei, 2023. "PRMT1 mediated methylation of cGAS suppresses anti-tumor immunity," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    7. Xingxing Ren & Qiuyuan Liu & Peirong Zhou & Tingyue Zhou & Decai Wang & Qiao Mei & Richard A. Flavell & Zhanju Liu & Mingsong Li & Wen Pan & Shu Zhu, 2024. "DHX9 maintains epithelial homeostasis by restraining R-loop-mediated genomic instability in intestinal stem cells," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
    8. Qilong Li & Kunying Lv & Ning Jiang & Tong Liu & Nan Hou & Liying Yu & Yixin Yang & Anni Feng & Yiwei Zhang & Ziwei Su & Xiaoyu Sang & Ying Feng & Ran Chen & Wenyue Xu & Liwang Cui & Yaming Cao & Qiju, 2024. "SOD3 suppresses early cellular immune responses to parasite infection," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
    9. Lingzhen Kong & Chen Cheng & Abigael Cheruiyot & Jiayi Yuan & Yichan Yang & Sydney Hwang & Daniel Foust & Ning Tsao & Emily Wilkerson & Nima Mosammaparast & Michael B. Major & David W. Piston & Shan L, 2024. "TCAF1 promotes TRPV2-mediated Ca2+ release in response to cytosolic DNA to protect stressed replication forks," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    10. Andras Boeszoermenyi & Léa Bernaleau & Xudong Chen & Felix Kartnig & Min Xie & Haobo Zhang & Sensen Zhang & Maeva Delacrétaz & Anna Koren & Ann-Katrin Hopp & Vojtech Dvorak & Stefan Kubicek & Daniel A, 2023. "A conformation-locking inhibitor of SLC15A4 with TASL proteostatic anti-inflammatory activity," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
    11. Xuan Wang & Yingqi Liu & Chencheng Xue & Yan Hu & Yuanyuan Zhao & Kaiyong Cai & Menghuan Li & Zhong Luo, 2022. "A protein-based cGAS-STING nanoagonist enhances T cell-mediated anti-tumor immune responses," Nature Communications, Nature, vol. 13(1), pages 1-22, December.
    12. Xintao Tu & Ting-Ting Chu & Devon Jeltema & Kennady Abbott & Kun Yang & Cong Xing & Jie Han & Nicole Dobbs & Nan Yan, 2022. "Interruption of post-Golgi STING trafficking activates tonic interferon signaling," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    13. Matteo Gentili & Bingxu Liu & Malvina Papanastasiou & Deborah Dele-Oni & Marc A. Schwartz & Rebecca J. Carlson & Aziz M. Al’Khafaji & Karsten Krug & Adam Brown & John G. Doench & Steven A. Carr & Nir , 2023. "ESCRT-dependent STING degradation inhibits steady-state and cGAMP-induced signalling," Nature Communications, Nature, vol. 14(1), pages 1-22, December.
    14. Niranjana Natarajan & Jonathan Florentin & Ebin Johny & Hanxi Xiao & Scott Patrick O’Neil & Liqun Lei & Jixing Shen & Lee Ohayon & Aaron R. Johnson & Krithika Rao & Xiaoyun Li & Yanwu Zhao & Yingze Zh, 2024. "Aberrant mitochondrial DNA synthesis in macrophages exacerbates inflammation and atherosclerosis," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
    15. Juan F. Quintana & Praveena Chandrasegaran & Matthew C. Sinton & Emma M. Briggs & Thomas D. Otto & Rhiannon Heslop & Calum Bentley-Abbot & Colin Loney & Luis de Lecea & Neil A. Mabbott & Annette MacLe, 2022. "Single cell and spatial transcriptomic analyses reveal microglia-plasma cell crosstalk in the brain during Trypanosoma brucei infection," Nature Communications, Nature, vol. 13(1), pages 1-19, December.
    16. Ying Huang & Geng Qin & TingTing Cui & Chuanqi Zhao & Jinsong Ren & Xiaogang Qu, 2023. "A bimetallic nanoplatform for STING activation and CRISPR/Cas mediated depletion of the methionine transporter in cancer cells restores anti-tumor immune responses," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    17. Mengyan Hu & Tiemei Li & Xiaomeng Ma & Sanxin Liu & Chunyi Li & Zhenchao Huang & Yinyao Lin & Ruizhen Wu & Shisi Wang & Danli Lu & Tingting Lu & Xuejiao Men & Shishi Shen & Huipeng Huang & Yuxin Liu &, 2023. "Macrophage lineage cells-derived migrasomes activate complement-dependent blood-brain barrier damage in cerebral amyloid angiopathy mouse model," Nature Communications, Nature, vol. 14(1), pages 1-19, December.
    18. Joanne L. Parker & Justin C. Deme & Simon M. Lichtinger & Gabriel Kuteyi & Philip C. Biggin & Susan M. Lea & Simon Newstead, 2024. "Structural basis for antibiotic transport and inhibition in PepT2," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    19. Caroline Wasén & Leah C. Beauchamp & Julia Vincentini & Shuqi Li & Danielle S. LeServe & Christian Gauthier & Juliana R. Lopes & Thais G. Moreira & Millicent N. Ekwudo & Zhuoran Yin & Patrick da Silva, 2024. "Bacteroidota inhibit microglia clearance of amyloid-beta and promote plaque deposition in Alzheimer’s disease mouse models," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    20. Wen Zhou & Desmond Richmond-Buccola & Qiannan Wang & Philip J. Kranzusch, 2022. "Structural basis of human TREX1 DNA degradation and autoimmune disease," Nature Communications, Nature, vol. 13(1), pages 1-9, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-41381-9. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.