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In vivo CRISPR screens reveal Serpinb9 and Adam2 as regulators of immune therapy response in lung cancer

Author

Listed:
  • Dzana Dervovic

    (Mount Sinai Hospital)

  • Ahmad A. Malik

    (Mount Sinai Hospital
    University of Toronto)

  • Edward L. Y. Chen

    (Mount Sinai Hospital)

  • Masahiro Narimatsu

    (Mount Sinai Hospital)

  • Nina Adler

    (Computational Biology Program, Ontario Institute for Cancer Research)

  • Somaieh Afiuni-Zadeh

    (Mount Sinai Hospital)

  • Dagmar Krenbek

    (Klinik Floridsdorf)

  • Sebastien Martinez

    (Mount Sinai Hospital)

  • Ricky Tsai

    (Mount Sinai Hospital)

  • Jonathan Boucher

    (Université de Montréal)

  • Jacob M. Berman

    (Mount Sinai Hospital)

  • Katie Teng

    (Mount Sinai Hospital
    University of Toronto)

  • Arshad Ayyaz

    (Mount Sinai Hospital
    University of Calgary)

  • YiQing Lü

    (Mount Sinai Hospital
    University of Toronto)

  • Geraldine Mbamalu

    (Mount Sinai Hospital)

  • Sampath K. Loganathan

    (Mount Sinai Hospital
    McGill University)

  • Jongbok Lee

    (University Health Network)

  • Li Zhang

    (University Health Network
    University of Toronto)

  • Cynthia Guidos

    (University Health Network)

  • Jeffrey Wrana

    (Mount Sinai Hospital
    University of Toronto)

  • Arschang Valipour

    (Klinik Floridsdorf)

  • Philippe P. Roux

    (Université de Montréal
    Université de Montréal)

  • Jüri Reimand

    (University of Toronto
    Computational Biology Program, Ontario Institute for Cancer Research)

  • Hartland W. Jackson

    (Mount Sinai Hospital
    University of Toronto)

  • Daniel Schramek

    (Mount Sinai Hospital
    University of Toronto)

Abstract

How the genetic landscape governs a tumor’s response to immunotherapy remains poorly understood. To assess the immune-modulatory capabilities of 573 genes associated with altered cytotoxicity in human cancers, here we perform CRISPR/Cas9 screens directly in mouse lung cancer models. We recover the known immune evasion factors Stat1 and Serpinb9 and identify the cancer testis antigen Adam2 as an immune modulator, whose expression is induced by KrasG12D and further elevated by immunotherapy. Using loss- and gain-of-function experiments, we show that ADAM2 functions as an oncogene by restraining interferon and TNF cytokine signaling causing reduced presentation of tumor-associated antigens. ADAM2 also restricts expression of the immune checkpoint inhibitors PDL1, LAG3, TIGIT and TIM3 in the tumor microenvironment, which might explain why ex vivo expanded and adoptively transferred cytotoxic T-cells show enhanced cytotoxic efficacy in ADAM2 overexpressing tumors. Together, direct in vivo CRISPR/Cas9 screens can uncover genetic alterations that control responses to immunotherapies.

Suggested Citation

  • Dzana Dervovic & Ahmad A. Malik & Edward L. Y. Chen & Masahiro Narimatsu & Nina Adler & Somaieh Afiuni-Zadeh & Dagmar Krenbek & Sebastien Martinez & Ricky Tsai & Jonathan Boucher & Jacob M. Berman & K, 2023. "In vivo CRISPR screens reveal Serpinb9 and Adam2 as regulators of immune therapy response in lung cancer," Nature Communications, Nature, vol. 14(1), pages 1-21, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-38841-7
    DOI: 10.1038/s41467-023-38841-7
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