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Oncogenic CALR mutant C-terminus mediates dual binding to the thrombopoietin receptor triggering complex dimerization and activation

Author

Listed:
  • Nicolas Papadopoulos

    (Ludwig Institute for Cancer Research Brussels
    Université catholique de Louvain and de Duve Institute)

  • Audrey Nédélec

    (Ludwig Institute for Cancer Research Brussels
    Université catholique de Louvain and de Duve Institute)

  • Allison Derenne

    (Spectralys Biotech SRL)

  • Teodor Asvadur Şulea

    (Institute of Biochemistry of the Romanian Academy)

  • Christian Pecquet

    (Ludwig Institute for Cancer Research Brussels
    Université catholique de Louvain and de Duve Institute)

  • Ilyas Chachoua

    (Ludwig Institute for Cancer Research Brussels
    Université catholique de Louvain and de Duve Institute
    Bilkent University)

  • Gaëlle Vertenoeil

    (Ludwig Institute for Cancer Research Brussels
    Université catholique de Louvain and de Duve Institute)

  • Thomas Tilmant

    (Universiy of Liège)

  • Andrei-Jose Petrescu

    (Institute of Biochemistry of the Romanian Academy)

  • Gabriel Mazzucchelli

    (Universiy of Liège)

  • Bogdan I. Iorga

    (Université Paris-Saclay, CNRS, Institut de Chimie des Substances Naturelles)

  • Didier Vertommen

    (Université catholique de Louvain and de Duve Institute
    de Duve Institute and MASSPROT platform)

  • Stefan N. Constantinescu

    (Ludwig Institute for Cancer Research Brussels
    Université catholique de Louvain and de Duve Institute
    Walloon Excelence in Life Sciences and Biotechnology, WELBIO
    Oxford University)

Abstract

Calreticulin (CALR) frameshift mutations represent the second cause of myeloproliferative neoplasms (MPN). In healthy cells, CALR transiently and non-specifically interacts with immature N-glycosylated proteins through its N-terminal domain. Conversely, CALR frameshift mutants turn into rogue cytokines by stably and specifically interacting with the Thrombopoietin Receptor (TpoR), inducing its constitutive activation. Here, we identify the basis of the acquired specificity of CALR mutants for TpoR and define the mechanisms by which complex formation triggers TpoR dimerization and activation. Our work reveals that CALR mutant C-terminus unmasks CALR N-terminal domain, rendering it more accessible to bind immature N-glycans on TpoR. We further find that the basic mutant C-terminus is partially α-helical and define how its α-helical segment concomitantly binds acidic patches of TpoR extracellular domain and induces dimerization of both CALR mutant and TpoR. Finally, we propose a model of the tetrameric TpoR-CALR mutant complex and identify potentially targetable sites.

Suggested Citation

  • Nicolas Papadopoulos & Audrey Nédélec & Allison Derenne & Teodor Asvadur Şulea & Christian Pecquet & Ilyas Chachoua & Gaëlle Vertenoeil & Thomas Tilmant & Andrei-Jose Petrescu & Gabriel Mazzucchelli &, 2023. "Oncogenic CALR mutant C-terminus mediates dual binding to the thrombopoietin receptor triggering complex dimerization and activation," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-37277-3
    DOI: 10.1038/s41467-023-37277-3
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    References listed on IDEAS

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    1. Peter Eastman & Jason Swails & John D Chodera & Robert T McGibbon & Yutong Zhao & Kyle A Beauchamp & Lee-Ping Wang & Andrew C Simmonett & Matthew P Harrigan & Chaya D Stern & Rafal P Wiewiora & Bernar, 2017. "OpenMM 7: Rapid development of high performance algorithms for molecular dynamics," PLOS Computational Biology, Public Library of Science, vol. 13(7), pages 1-17, July.
    2. Kathryn Tunyasuvunakool & Jonas Adler & Zachary Wu & Tim Green & Michal Zielinski & Augustin Žídek & Alex Bridgland & Andrew Cowie & Clemens Meyer & Agata Laydon & Sameer Velankar & Gerard J. Kleywegt, 2021. "Highly accurate protein structure prediction for the human proteome," Nature, Nature, vol. 596(7873), pages 590-596, August.
    3. John Jumper & Richard Evans & Alexander Pritzel & Tim Green & Michael Figurnov & Olaf Ronneberger & Kathryn Tunyasuvunakool & Russ Bates & Augustin Žídek & Anna Potapenko & Alex Bridgland & Clemens Me, 2021. "Highly accurate protein structure prediction with AlphaFold," Nature, Nature, vol. 596(7873), pages 583-589, August.
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