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Effects of phytoplankton, viral communities, and warming on free-living and particle-associated marine prokaryotic community structure

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  • Yi-Chun Yeh

    (University of Southern California)

  • Jed A. Fuhrman

    (University of Southern California)

Abstract

Free-living and particle-associated marine prokaryotes have physiological, genomic, and phylogenetic differences, yet factors influencing their temporal dynamics remain poorly constrained. In this study, we quantify the entire microbial community composition monthly over several years, including viruses, prokaryotes, phytoplankton, and total protists, from the San-Pedro Ocean Time-series using ribosomal RNA sequencing and viral metagenomics. Canonical analyses show that in addition to physicochemical factors, the double-stranded DNA viral community is the strongest factor predicting free-living prokaryotes, explaining 28% of variability, whereas the phytoplankton (via chloroplast 16S rRNA) community is strongest with particle-associated prokaryotes, explaining 31% of variability. Unexpectedly, protist community explains little variability. Our findings suggest that biotic interactions are significant determinants of the temporal dynamics of prokaryotes, and the relative importance of specific interactions varies depending on lifestyles. Also, warming influenced the prokaryotic community, which largely remained oligotrophic summer-like throughout 2014–15, with cyanobacterial populations shifting from cold-water ecotypes to warm-water ecotypes.

Suggested Citation

  • Yi-Chun Yeh & Jed A. Fuhrman, 2022. "Effects of phytoplankton, viral communities, and warming on free-living and particle-associated marine prokaryotic community structure," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-35551-4
    DOI: 10.1038/s41467-022-35551-4
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    1. S. A. Amin & L. R. Hmelo & H. M. van Tol & B. P. Durham & L. T. Carlson & K. R. Heal & R. L. Morales & C. T. Berthiaume & M. S. Parker & B. Djunaedi & A. E. Ingalls & M. R. Parsek & M. A. Moran & E. V, 2015. "Interaction and signalling between a cosmopolitan phytoplankton and associated bacteria," Nature, Nature, vol. 522(7554), pages 98-101, June.
    2. Lisa R. Moore & Gabrielle Rocap & Sallie W. Chisholm, 1998. "Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes," Nature, Nature, vol. 393(6684), pages 464-467, June.
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    1. Felix Milke & Jens Meyerjürgens & Meinhard Simon, 2023. "Ecological mechanisms and current systems shape the modular structure of the global oceans’ prokaryotic seascape," Nature Communications, Nature, vol. 14(1), pages 1-15, December.

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