IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v13y2022i1d10.1038_s41467-022-33351-4.html
   My bibliography  Save this article

The comparison of cancer gene mutation frequencies in Chinese and U.S. patient populations

Author

Listed:
  • Fayang Ma

    (Zhengzhou University
    China-US (Henan) Hormel Cancer Institute)

  • Kyle Laster

    (China-US (Henan) Hormel Cancer Institute)

  • Zigang Dong

    (Zhengzhou University
    China-US (Henan) Hormel Cancer Institute)

Abstract

Knowing the mutation frequency of cancer genes in China is crucial for reducing the global health burden. We integrate the tumor epidemiological statistics with cancer gene mutation rates identified in 11,948 cancer patients to determine their weighted proportions within a Chinese cancer patient cohort. TP53 (51.4%), LRP1B (13.4%), PIK3CA (11.6%), KRAS (11.1%), EGFR (10.6%), and APC (10.5%) are identified as the top mutated cancer genes in China. Additionally, 18 common cancer types from both China and U.S. cohorts are analyzed and classified into three patterns principally based upon TP53 mutation rates: TP53-Top, TP53-Plus, and Non-TP53. Next, corresponding similarities and prominent differences are identified upon comparing the mutational profiles from both cohorts. Finally, the potential population-specific and environmental risk factors underlying the disparities in cancer gene mutation rates between the U.S. and China are analyzed. Here, we show and compare the mutation rates of cancer genes in Chinese and U.S. population cohorts, for a better understanding of the associated etiological and epidemiological factors, which are important for cancer prevention and therapy.

Suggested Citation

  • Fayang Ma & Kyle Laster & Zigang Dong, 2022. "The comparison of cancer gene mutation frequencies in Chinese and U.S. patient populations," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
  • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-33351-4
    DOI: 10.1038/s41467-022-33351-4
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-022-33351-4
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-022-33351-4?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Leisa Johnson & Kim Mercer & Doron Greenbaum & Roderick T. Bronson & Denise Crowley & David A. Tuveson & Tyler Jacks, 2001. "Somatic activation of the K-ras oncogene causes early onset lung cancer in mice," Nature, Nature, vol. 410(6832), pages 1111-1116, April.
    2. Rahul Nahar & Weiwei Zhai & Tong Zhang & Angela Takano & Alexis J. Khng & Yin Yeng Lee & Xingliang Liu & Chong Hee Lim & Tina P. T. Koh & Zaw Win Aung & Tony Kiat Hon Lim & Lavanya Veeravalli & Ju Yua, 2018. "Elucidating the genomic architecture of Asian EGFR-mutant lung adenocarcinoma through multi-region exome sequencing," Nature Communications, Nature, vol. 9(1), pages 1-11, December.
    3. Gaurav Mendiratta & Eugene Ke & Meraj Aziz & David Liarakos & Melinda Tong & Edward C. Stites, 2021. "Cancer gene mutation frequencies for the U.S. population," Nature Communications, Nature, vol. 12(1), pages 1-11, December.
    4. Yun Zhang & Shunbin Xiong & Bin Liu & Vinod Pant & Francis Celii & Gilda Chau & Ana C. Elizondo-Fraire & Peirong Yang & Mingjian James You & Adel K. El-Naggar & Nicholas E. Navin & Guillermina Lozano, 2018. "Somatic Trp53 mutations differentially drive breast cancer and evolution of metastases," Nature Communications, Nature, vol. 9(1), pages 1-10, December.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Jingjie Yi & Omid Tavana & Huan Li & Donglai Wang & Richard J. Baer & Wei Gu, 2023. "Targeting USP2 regulation of VPRBP-mediated degradation of p53 and PD-L1 for cancer therapy," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
    2. Andreas Weigert & Xiang Zheng & Alina Nenzel & Kati Turkowski & Stefan Günther & Elisabeth Strack & Evelyn Sirait-Fischer & Eiman Elwakeel & Ivan M. Kur & Vandana S. Nikam & Chanil Valasarajan & Hauke, 2022. "Fibrocytes boost tumor-supportive phenotypic switches in the lung cancer niche via the endothelin system," Nature Communications, Nature, vol. 13(1), pages 1-21, December.
    3. Yao-Zhong Liu & Charles A Miller & Yan Zhuang & Sudurika S Mukhopadhyay & Shigeki Saito & Edward B. Overton & Gilbert F Morris, 2020. "The Impact of the Deepwater Horizon Oil Spill upon Lung Health—Mouse Model-Based RNA-Seq Analyses," IJERPH, MDPI, vol. 17(15), pages 1-23, July.
    4. Yoshitaka Sakamoto & Shuhei Miyake & Miho Oka & Akinori Kanai & Yosuke Kawai & Satoi Nagasawa & Yuichi Shiraishi & Katsushi Tokunaga & Takashi Kohno & Masahide Seki & Yutaka Suzuki & Ayako Suzuki, 2022. "Phasing analysis of lung cancer genomes using a long read sequencer," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
    5. Fernando C. Baltanás & Rósula García-Navas & Pablo Rodríguez-Ramos & Nuria Calzada & Cristina Cuesta & Javier Borrajo & Rocío Fuentes-Mateos & Andrea Olarte-San Juan & Nerea Vidaña & Esther Castellano, 2023. "Critical requirement of SOS1 for tumor development and microenvironment modulation in KRASG12D-driven lung adenocarcinoma," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    6. Bryan R. Gorman & Sun-Gou Ji & Michael Francis & Anoop K. Sendamarai & Yunling Shi & Poornima Devineni & Uma Saxena & Elizabeth Partan & Andrea K. DeVito & Jinyoung Byun & Younghun Han & Xiangjun Xiao, 2024. "Multi-ancestry GWAS meta-analyses of lung cancer reveal susceptibility loci and elucidate smoking-independent genetic risk," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    7. Ori Hassin & Nishanth Belugali Nataraj & Michal Shreberk-Shaked & Yael Aylon & Rona Yaeger & Giulia Fontemaggi & Saptaparna Mukherjee & Martino Maddalena & Adi Avioz & Ortal Iancu & Giuseppe Mallel & , 2022. "Different hotspot p53 mutants exert distinct phenotypes and predict outcome of colorectal cancer patients," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
    8. François Virard & Stéphane Giraud & Mélanie Bonnet & Léa Magadoux & Laetitia Martin & Thuy Ha Pham & Najwa Skafi & Sophie Deneuve & Rita Frem & Bruno O. Villoutreix & Nawal Hajj Sleiman & Jonathan Reb, 2024. "Targeting ERK-MYD88 interaction leads to ERK dysregulation and immunogenic cancer cell death," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
    9. Wenbin Xu & Han Yao & Zhen Wu & Xiaojun Yan & Zishan Jiao & Yajing Liu & Meng Zhang & Donglai Wang, 2024. "Oncoprotein SET-associated transcription factor ZBTB11 triggers lung cancer metastasis," Nature Communications, Nature, vol. 15(1), pages 1-21, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-33351-4. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.