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Germline mutation landscape of DNA damage repair genes in African Americans with prostate cancer highlights potentially targetable RAD genes

Author

Listed:
  • Indu Kohaar

    (Uniformed Services University of the Health Sciences and the Walter Reed National Military Medical Center
    Henry M. Jackson Foundation for the Advancement of Military Medicine)

  • Xijun Zhang

    (Uniformed Services University of the Health Sciences
    Uniformed Services University of the Health Sciences)

  • Shyh-Han Tan

    (Uniformed Services University of the Health Sciences and the Walter Reed National Military Medical Center
    Henry M. Jackson Foundation for the Advancement of Military Medicine)

  • Darryl Nousome

    (Uniformed Services University of the Health Sciences and the Walter Reed National Military Medical Center
    Henry M. Jackson Foundation for the Advancement of Military Medicine)

  • Kevin Babcock

    (Uniformed Services University of the Health Sciences and the Walter Reed National Military Medical Center)

  • Lakshmi Ravindranath

    (Uniformed Services University of the Health Sciences and the Walter Reed National Military Medical Center
    Henry M. Jackson Foundation for the Advancement of Military Medicine)

  • Gauthaman Sukumar

    (Uniformed Services University of the Health Sciences
    Uniformed Services University of the Health Sciences)

  • Elisa Mcgrath-Martinez

    (Uniformed Services University of the Health Sciences
    Uniformed Services University of the Health Sciences)

  • John Rosenberger

    (Uniformed Services University of the Health Sciences
    Uniformed Services University of the Health Sciences)

  • Camille Alba

    (Uniformed Services University of the Health Sciences
    Uniformed Services University of the Health Sciences)

  • Amina Ali

    (Uniformed Services University of the Health Sciences and the Walter Reed National Military Medical Center
    Henry M. Jackson Foundation for the Advancement of Military Medicine
    Walter Reed National Military Medical Center)

  • Denise Young

    (Uniformed Services University of the Health Sciences and the Walter Reed National Military Medical Center
    Henry M. Jackson Foundation for the Advancement of Military Medicine)

  • Yongmei Chen

    (Uniformed Services University of the Health Sciences and the Walter Reed National Military Medical Center)

  • Jennifer Cullen

    (Uniformed Services University of the Health Sciences and the Walter Reed National Military Medical Center)

  • Inger L. Rosner

    (Uniformed Services University of the Health Sciences and the Walter Reed National Military Medical Center)

  • Isabell A. Sesterhenn

    (Joint Pathology Center)

  • Albert Dobi

    (Uniformed Services University of the Health Sciences and the Walter Reed National Military Medical Center
    Henry M. Jackson Foundation for the Advancement of Military Medicine)

  • Gregory Chesnut

    (Uniformed Services University of the Health Sciences and the Walter Reed National Military Medical Center
    Walter Reed National Military Medical Center)

  • Clesson Turner

    (Uniformed Services University of the Health Sciences)

  • Clifton Dalgard

    (Uniformed Services University of the Health Sciences
    Uniformed Services University of the Health Sciences)

  • Matthew D. Wilkerson

    (Uniformed Services University of the Health Sciences
    Uniformed Services University of the Health Sciences)

  • Harvey B. Pollard

    (Uniformed Services University of the Health Sciences
    Uniformed Services University of the Health Sciences)

  • Shiv Srivastava

    (Uniformed Services University of the Health Sciences and the Walter Reed National Military Medical Center
    Georgetown University School of Medicine)

  • Gyorgy Petrovics

    (Uniformed Services University of the Health Sciences and the Walter Reed National Military Medical Center
    Henry M. Jackson Foundation for the Advancement of Military Medicine)

Abstract

In prostate cancer, emerging data highlight the role of DNA damage repair genes (DDRGs) in aggressive forms of the disease. However, DDRG mutations in African American men are not yet fully defined. Here, we profile germline mutations in all known DDRGs (N = 276) using whole genome sequences from blood DNA of a matched cohort of patients with primary prostate cancer comprising of 300 African American and 300 European Ancestry prostate cancer patients, to determine whether the mutation status can enhance patient stratification for specific targeted therapies. Here, we show that only 13 of the 46 DDRGs identified with pathogenic/likely pathogenic mutations are present in both African American and European ancestry patients. Importantly, RAD family genes (RAD51, RAD54L, RAD54B), which are potentially targetable, as well as PMS2 and BRCA1, are among the most frequently mutated DDRGs in African American, but not in European Ancestry patients.

Suggested Citation

  • Indu Kohaar & Xijun Zhang & Shyh-Han Tan & Darryl Nousome & Kevin Babcock & Lakshmi Ravindranath & Gauthaman Sukumar & Elisa Mcgrath-Martinez & John Rosenberger & Camille Alba & Amina Ali & Denise You, 2022. "Germline mutation landscape of DNA damage repair genes in African Americans with prostate cancer highlights potentially targetable RAD genes," Nature Communications, Nature, vol. 13(1), pages 1-9, December.
  • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-28945-x
    DOI: 10.1038/s41467-022-28945-x
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    References listed on IDEAS

    as
    1. Qin Zhou & Jinzhou Huang & Chao Zhang & Fei Zhao & Wootae Kim & Xinyi Tu & Yong Zhang & Somaira Nowsheen & Qian Zhu & Min Deng & Yuping Chen & Bo Qin & Kuntian Luo & Baohua Liu & Zhenkun Lou & Robert , 2020. "The bromodomain containing protein BRD-9 orchestrates RAD51–RAD54 complex formation and regulates homologous recombination-mediated repair," Nature Communications, Nature, vol. 11(1), pages 1-13, December.
    2. Monkol Lek & Konrad J. Karczewski & Eric V. Minikel & Kaitlin E. Samocha & Eric Banks & Timothy Fennell & Anne H. O’Donnell-Luria & James S. Ware & Andrew J. Hill & Beryl B. Cummings & Taru Tukiainen , 2016. "Analysis of protein-coding genetic variation in 60,706 humans," Nature, Nature, vol. 536(7616), pages 285-291, August.
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