IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v13y2022i1d10.1038_s41467-022-28529-9.html
   My bibliography  Save this article

AusTrakka: Fast-tracking nationalized genomics surveillance in response to the COVID-19 pandemic

Author

Listed:
  • Tuyet Hoang

    (The University of Melbourne at The Peter Doherty Institute for Infection and Immunity)

  • Anders Gonçalves Silva

    (The University of Melbourne at The Peter Doherty Institute for Infection and Immunity)

  • Amy V. Jennison

    (Public Health Microbiology, Queensland Public Health and Infectious Diseases Reference Genomics (Q-PHIRE Genomics), Forensic and Scientific Services, Queensland Department of Health)

  • Deborah A. Williamson

    (Victorian Infectious Diseases Reference Laboratory, Royal Melbourne Hospital at The Peter Doherty Institute for Infection and Immunity
    Department of Infectious Diseases, University of Melbourne at The Peter Doherty Institute for Infection and Immunity)

  • Benjamin P. Howden

    (The University of Melbourne at The Peter Doherty Institute for Infection and Immunity)

  • Torsten Seemann

    (The University of Melbourne at The Peter Doherty Institute for Infection and Immunity)

Abstract

The COVID-19 pandemic has driven demand for integrated genomics, resulting in fast-tracked development of AusTrakka, Australia’s pathogen genomics platform. This facilitated rapid data sharing, democratised access to computational and bioinformatic resources and expertise, and achieved national real-time genomic surveillance.

Suggested Citation

  • Tuyet Hoang & Anders Gonçalves Silva & Amy V. Jennison & Deborah A. Williamson & Benjamin P. Howden & Torsten Seemann, 2022. "AusTrakka: Fast-tracking nationalized genomics surveillance in response to the COVID-19 pandemic," Nature Communications, Nature, vol. 13(1), pages 1-4, December.
    • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-28529-9
    DOI: 10.1038/s41467-022-28529-9
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-022-28529-9
    File Function: Abstract
    Download Restriction: no
    File URL: https://libkey.io/10.1038/s41467-022-28529-9?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Torsten Seemann & Courtney R. Lane & Norelle L. Sherry & Sebastian Duchene & Anders Gonçalves da Silva & Leon Caly & Michelle Sait & Susan A. Ballard & Kristy Horan & Mark B. Schultz & Tuyet Hoang & M, 2020. "Tracking the COVID-19 pandemic in Australia using genomics," Nature Communications, Nature, vol. 11(1), pages 1-9, December.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Dinesh Aggarwal & Ben Warne & Aminu S. Jahun & William L. Hamilton & Thomas Fieldman & Louis Plessis & Verity Hill & Beth Blane & Emmeline Watkins & Elizabeth Wright & Grant Hall & Catherine Ludden & , 2022. "Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    2. Dinesh Aggarwal & Andrew J. Page & Ulf Schaefer & George M. Savva & Richard Myers & Erik Volz & Nicholas Ellaby & Steven Platt & Natalie Groves & Eileen Gallagher & Niamh M. Tumelty & Thanh Viet & Gar, 2022. "Genomic assessment of quarantine measures to prevent SARS-CoV-2 importation and transmission," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
    3. Jessica E. Stockdale & Kurnia Susvitasari & Paul Tupper & Benjamin Sobkowiak & Nicola Mulberry & Anders Gonçalves da Silva & Anne E. Watt & Norelle L. Sherry & Corinna Minko & Benjamin P. Howden & Cou, 2023. "Genomic epidemiology offers high resolution estimates of serial intervals for COVID-19," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    4. Hafiz Suliman Munawar & Sara Imran Khan & Fahim Ullah & Abbas Z. Kouzani & M. A. Parvez Mahmud, 2021. "Effects of COVID-19 on the Australian Economy: Insights into the Mobility and Unemployment Rates in Education and Tourism Sectors," Sustainability, MDPI, vol. 13(20), pages 1-17, October.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-28529-9. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.