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CryoEM structure of the low-complexity domain of hnRNPA2 and its conversion to pathogenic amyloid

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  • Jiahui Lu

    (University of California, Los Angeles
    Howard Hughes Medical Institute)

  • Qin Cao

    (University of California, Los Angeles
    Howard Hughes Medical Institute)

  • Michael P. Hughes

    (University of California, Los Angeles
    Howard Hughes Medical Institute
    St. Jude Children’s Research Hospital)

  • Michael R. Sawaya

    (University of California, Los Angeles
    Howard Hughes Medical Institute)

  • David R. Boyer

    (University of California, Los Angeles
    Howard Hughes Medical Institute)

  • Duilio Cascio

    (University of California, Los Angeles
    Howard Hughes Medical Institute)

  • David S. Eisenberg

    (University of California, Los Angeles
    Howard Hughes Medical Institute)

Abstract

hnRNPA2 is a human ribonucleoprotein (RNP) involved in RNA metabolism. It forms fibrils both under cellular stress and in mutated form in neurodegenerative conditions. Previous work established that the C-terminal low-complexity domain (LCD) of hnRNPA2 fibrillizes under stress, and missense mutations in this domain are found in the disease multisystem proteinopathy (MSP). However, little is known at the atomic level about the hnRNPA2 LCD structure that is involved in those processes and how disease mutations cause structural change. Here we present the cryo-electron microscopy (cryoEM) structure of the hnRNPA2 LCD fibril core and demonstrate its capability to form a reversible hydrogel in vitro containing amyloid-like fibrils. Whereas these fibrils, like pathogenic amyloid, are formed from protein chains stacked into β-sheets by backbone hydrogen bonds, they display distinct structural differences: the chains are kinked, enabling non-covalent cross-linking of fibrils and disfavoring formation of pathogenic steric zippers. Both reversibility and energetic calculations suggest these fibrils are less stable than pathogenic amyloid. Moreover, the crystal structure of the disease-mutation-containing segment (D290V) of hnRNPA2 suggests that the replacement fundamentally alters the fibril structure to a more stable energetic state. These findings illuminate how molecular interactions promote protein fibril networks and how mutation can transform fibril structure from functional to a pathogenic form.

Suggested Citation

  • Jiahui Lu & Qin Cao & Michael P. Hughes & Michael R. Sawaya & David R. Boyer & Duilio Cascio & David S. Eisenberg, 2020. "CryoEM structure of the low-complexity domain of hnRNPA2 and its conversion to pathogenic amyloid," Nature Communications, Nature, vol. 11(1), pages 1-11, December.
  • Handle: RePEc:nat:natcom:v:11:y:2020:i:1:d:10.1038_s41467-020-17905-y
    DOI: 10.1038/s41467-020-17905-y
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    Cited by:

    1. Robert Bücker & Carolin Seuring & Cornelia Cazey & Katharina Veith & Maria García-Alai & Kay Grünewald & Meytal Landau, 2022. "The Cryo-EM structures of two amphibian antimicrobial cross-β amyloid fibrils," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    2. Rosa Antón & Miguel Á. Treviño & David Pantoja-Uceda & Sara Félix & María Babu & Eurico J. Cabrita & Markus Zweckstetter & Philip Tinnefeld & Andrés M. Vera & Javier Oroz, 2024. "Alternative low-populated conformations prompt phase transitions in polyalanine repeat expansions," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    3. Javier Garcia-Pardo & Andrea Bartolomé-Nafría & Antonio Chaves-Sanjuan & Marcos Gil-Garcia & Cristina Visentin & Martino Bolognesi & Stefano Ricagno & Salvador Ventura, 2023. "Cryo-EM structure of hnRNPDL-2 fibrils, a functional amyloid associated with limb-girdle muscular dystrophy D3," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
    4. Lukas Frey & Jiangtao Zhou & Gea Cereghetti & Marco E. Weber & David Rhyner & Aditya Pokharna & Luca Wenchel & Harindranath Kadavath & Yiping Cao & Beat H. Meier & Matthias Peter & Jason Greenwald & R, 2024. "A structural rationale for reversible vs irreversible amyloid fibril formation from a single protein," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
    5. Einav Tayeb-Fligelman & Jeannette T. Bowler & Christen E. Tai & Michael R. Sawaya & Yi Xiao Jiang & Gustavo Garcia & Sarah L. Griner & Xinyi Cheng & Lukasz Salwinski & Liisa Lutter & Paul M. Seidler &, 2023. "Low complexity domains of the nucleocapsid protein of SARS-CoV-2 form amyloid fibrils," Nature Communications, Nature, vol. 14(1), pages 1-18, December.

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