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Short-Term Effects of Different Organic Amendments on Soil Fungal Composition

Author

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  • Muhammad Tayyab

    (Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou 350002, China
    College of Crop Science, Fujian Agriculture and Forestry University, Fuzhou 350002, China)

  • Waqar Islam

    (College of Geographical Sciences, Fujian Normal University, Fuzhou 350007, China)

  • Chol Gyu Lee

    (Graduate School of Bio-Applications and Systems Engineering, Tokyo University of Agriculture and Technology, Koganei, Tokyo 184-8588, Japan
    Japan Collection of Microorganisms, RIKEN BioResource Center, Tsukuba, Ibaraki 305–0074, Japan)

  • Ziqin Pang

    (Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou 350002, China
    College of Crop Science, Fujian Agriculture and Forestry University, Fuzhou 350002, China)

  • Farghama Khalil

    (Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou 350002, China
    College of Crop Science, Fujian Agriculture and Forestry University, Fuzhou 350002, China)

  • Sheng Lin

    (Fujian Provincial Key Laboratory of Agro-ecological Processing and Safety Monitoring, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China
    Key Laboratory of Crop Ecology and Molecular Physiology, Fujian Agriculture and Forestry University, Fuzhou 35002, China)

  • Wenxiong Lin

    (Fujian Provincial Key Laboratory of Agro-ecological Processing and Safety Monitoring, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China
    Key Laboratory of Crop Ecology and Molecular Physiology, Fujian Agriculture and Forestry University, Fuzhou 35002, China)

  • Hua Zhang

    (Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou 350002, China
    College of Crop Science, Fujian Agriculture and Forestry University, Fuzhou 350002, China)

Abstract

Fungi play an essential role in recovering the quality and fertility of soil. There is a limited understating of the complex response of fungal diversity to different organic materials in clay loam soil. Here, we report the response of soil fungi toward the short-term application of manure (M), sugarcane straw (S), and sugarcane straw plus manure (MS), including no organic material control (CK) at two different time points (50 and 100 days after application). Illumina sequencing was used to examine the fungal communities. Our results reveal a significant shift among the soil fungal community structure associated with each organic material application. After both time points, amendments—especially M and MS—decreased the fungal richness and stimulated the copiotrophic fungal group ( Ascomycota ) compared to the control soil (CK) and S-amended soil. On the contrary, as compared to the M and MS-amended soils, the CK and S-amended soils at both time points increased the fungal richness and stimulated the oligotrophic fungal groups. Organic material use, especially M and MS, showed variable results regarding pathogenic fungi enhancing the abundance of Lophodermium and Cercophora and decreasing Fusarium . Concerning the abundance of plant-beneficial fungi, Mortierella was reduced, and Podospora was increased by M and MS input. FUNGuild showed that the amendment of organic materials efficiently declined the abundance of endophytes and plant pathogens, but also enhanced the animal pathogens in terms of abundance with respect to CK at two time points. This study could be useful to provide a novel understanding of the management of soil-borne pathogens by organic amendments for the sustainable production of short-term crops.

Suggested Citation

  • Muhammad Tayyab & Waqar Islam & Chol Gyu Lee & Ziqin Pang & Farghama Khalil & Sheng Lin & Wenxiong Lin & Hua Zhang, 2019. "Short-Term Effects of Different Organic Amendments on Soil Fungal Composition," Sustainability, MDPI, vol. 11(1), pages 1-13, January.
    • Handle: RePEc:gam:jsusta:v:11:y:2019:i:1:p:198-:d:194554
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    References listed on IDEAS

    as
    1. Meredith D. M. Jones & Irene Forn & Catarina Gadelha & Martin J. Egan & David Bass & Ramon Massana & Thomas A. Richards, 2011. "Discovery of novel intermediate forms redefines the fungal tree of life," Nature, Nature, vol. 474(7350), pages 200-203, June.
    2. Verena Seufert & Navin Ramankutty & Jonathan A. Foley, 2012. "Comparing the yields of organic and conventional agriculture," Nature, Nature, vol. 485(7397), pages 229-232, May.
    3. Muhammad Tayyab & Waqar Islam & Yasir Arafat & Ziqin Pang & Caifang Zhang & Yu Lin & Muhammad Waqas & Sheng Lin & Wenxiong Lin & Hua Zhang, 2018. "Effect of Sugarcane Straw and Goat Manure on Soil Nutrient Transformation and Bacterial Communities," Sustainability, MDPI, vol. 10(7), pages 1-21, July.
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    Cited by:

    1. Anna Karpinska & Demi Ryan & Kieran Germaine & David Dowling & Patrick Forrestal & Thomais Kakouli-Duarte, 2021. "Soil Microbial and Nematode Community Response to the Field Application of Recycled Bio-Based Fertilisers in Irish Grassland," Sustainability, MDPI, vol. 13(22), pages 1-22, November.
    2. Taimoor Hassan Farooq & Uttam Kumar & Awais Shakoor & Gadah Albasher & Saad Alkahtani & Humaira Rizwana & Muhammad Tayyab & Jalpa Dobaria & Muhammad Iftikhar Hussain & Pengfei Wu, 2021. "Influence of Intraspecific Competition Stress on Soil Fungal Diversity and Composition in Relation to Tree Growth and Soil Fertility in Sub-Tropical Soils under Chinese Fir Monoculture," Sustainability, MDPI, vol. 13(19), pages 1-18, September.
    3. Qinli Qiu & Dongmei Fan & Yinmao Wang & Danyi Huang & Yu Wang & Junhui Ma & Xiaochang Wang, 2021. "Effect of Calcium Cyanamide on Soil Fungal Community in Successive Tea-Cuttings Nursery," Agriculture, MDPI, vol. 11(8), pages 1-17, July.

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