IDEAS home Printed from https://ideas.repec.org/a/gam/jmathe/v12y2024i11p1684-d1404191.html
   My bibliography  Save this article

Hybrid Genetic Algorithm and CMA-ES Optimization for RNN-Based Chemical Compound Classification

Author

Listed:
  • Zhenkai Guo

    (School of Mathematics and Statistics Science, Ludong University, Yantai 264025, China)

  • Dianlong Hou

    (Dongying United Petroleum & Chemicals Co., Ltd., Dongying 257347, China)

  • Qiang He

    (College of Medicine and Biological Information Engineering, Northeastern University, Shenyang 110169, China)

Abstract

The compound classification strategies addressed in this study encounter challenges related to either low efficiency or accuracy. Precise classification of chemical compounds from SMILES symbols holds significant importance in domains such as drug discovery, materials science, and environmental toxicology. In this paper, we introduce a novel hybrid optimization framework named GA-CMA-ES which integrates Genetic Algorithms (GA) and the Covariance Matrix Adaptation Evolution Strategy (CMA-ES) to train Recurrent Neural Networks (RNNs) for compound classification. Leveraging the global exploration capabilities og GAs and local exploration abilities of the CMA-ES, the proposed method achieves notable performance, attaining an 83% classification accuracy on a benchmark dataset, surpassing the baseline method. Furthermore, the hybrid approach exhibits enhanced convergence speed, computational efficiency, and robustness across diverse datasets and levels of complexity.

Suggested Citation

  • Zhenkai Guo & Dianlong Hou & Qiang He, 2024. "Hybrid Genetic Algorithm and CMA-ES Optimization for RNN-Based Chemical Compound Classification," Mathematics, MDPI, vol. 12(11), pages 1-18, May.
  • Handle: RePEc:gam:jmathe:v:12:y:2024:i:11:p:1684-:d:1404191
    as

    Download full text from publisher

    File URL: https://www.mdpi.com/2227-7390/12/11/1684/pdf
    Download Restriction: no

    File URL: https://www.mdpi.com/2227-7390/12/11/1684/
    Download Restriction: no
    ---><---

    References listed on IDEAS

    as
    1. Anastasiia V. Sadybekov & Vsevolod Katritch, 2023. "Computational approaches streamlining drug discovery," Nature, Nature, vol. 616(7958), pages 673-685, April.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Xin Chen & Kexin Wang & Jianfang Chen & Chao Wu & Jun Mao & Yuanpeng Song & Yijing Liu & Zhenhua Shao & Xuemei Pu, 2024. "Integrative residue-intuitive machine learning and MD Approach to Unveil Allosteric Site and Mechanism for β2AR," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
    2. Alessio Fallani & Leonardo Medrano Sandonas & Alexandre Tkatchenko, 2024. "Inverse mapping of quantum properties to structures for chemical space of small organic molecules," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    3. Arnau Comajuncosa-Creus & Guillem Jorba & Xavier Barril & Patrick Aloy, 2024. "Comprehensive detection and characterization of human druggable pockets through binding site descriptors," Nature Communications, Nature, vol. 15(1), pages 1-20, December.
    4. Patrick Bryant & Atharva Kelkar & Andrea Guljas & Cecilia Clementi & Frank Noé, 2024. "Structure prediction of protein-ligand complexes from sequence information with Umol," Nature Communications, Nature, vol. 15(1), pages 1-12, December.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:gam:jmathe:v:12:y:2024:i:11:p:1684-:d:1404191. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: MDPI Indexing Manager (email available below). General contact details of provider: https://www.mdpi.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.