IDEAS home Printed from https://ideas.repec.org/a/gam/jijerp/v18y2021i18p9739-d636443.html
   My bibliography  Save this article

Enhanced Sentinel Surveillance System for COVID-19 Outbreak Prediction in a Large European Dialysis Clinics Network

Author

Listed:
  • Francesco Bellocchio

    (Fresenius Medical Care Italia SpA, Palazzo Pignano, 26020 Lombardia, Italy)

  • Paola Carioni

    (Fresenius Medical Care Italia SpA, Palazzo Pignano, 26020 Lombardia, Italy)

  • Caterina Lonati

    (Center for Preclinical Research, Fondazione IRCCS Ca’ Granda Ospedale Maggiore Policlinico, 20122 Milan, Italy)

  • Mario Garbelli

    (Fresenius Medical Care Italia SpA, Palazzo Pignano, 26020 Lombardia, Italy)

  • Francisco Martínez-Martínez

    (Santa Barbara Smart Health S. L., Parc Cientific Universitat id Valencia, Carrer del Catedràtic Agustín Escardino Benlloch, 9, 46980 Paterna, Spain)

  • Stefano Stuard

    (Fresenius Medical Care Deutschland GmbH, 61352 Bad Homburg, Germany)

  • Luca Neri

    (Fresenius Medical Care Italia SpA, Palazzo Pignano, 26020 Lombardia, Italy
    Current address: Clinical & Data Intelligence Systems—Advanced Analytics, Fresenius Medical Care Deutschland GmbH, Via Papa Giovanni Paolo II, 41, 26020 Vaiano Cremasco, Italy.)

Abstract

Accurate predictions of COVID-19 epidemic dynamics may enable timely organizational interventions in high-risk regions. We exploited the interconnection of the Fresenius Medical Care (FMC) European dialysis clinic network to develop a sentinel surveillance system for outbreak prediction. We developed an artificial intelligence-based model considering the information related to all clinics belonging to the European Nephrocare Network. The prediction tool provides risk scores of the occurrence of a COVID-19 outbreak in each dialysis center within a 2-week forecasting horizon. The model input variables include information related to the epidemic status and trends in clinical practice patterns of the target clinic, regional epidemic metrics, and the distance-weighted risk estimates of adjacent dialysis units. On the validation dates, there were 30 (5.09%), 39 (6.52%), and 218 (36.03%) clinics with two or more patients with COVID-19 infection during the 2-week prediction window. The performance of the model was suitable in all testing windows: AUC = 0.77, 0.80, and 0.81, respectively. The occurrence of new cases in a clinic propagates distance-weighted risk estimates to proximal dialysis units. Our machine learning sentinel surveillance system may allow for a prompt risk assessment and timely response to COVID-19 surges throughout networked European clinics.

Suggested Citation

  • Francesco Bellocchio & Paola Carioni & Caterina Lonati & Mario Garbelli & Francisco Martínez-Martínez & Stefano Stuard & Luca Neri, 2021. "Enhanced Sentinel Surveillance System for COVID-19 Outbreak Prediction in a Large European Dialysis Clinics Network," IJERPH, MDPI, vol. 18(18), pages 1-18, September.
  • Handle: RePEc:gam:jijerp:v:18:y:2021:i:18:p:9739-:d:636443
    as

    Download full text from publisher

    File URL: https://www.mdpi.com/1660-4601/18/18/9739/pdf
    Download Restriction: no

    File URL: https://www.mdpi.com/1660-4601/18/18/9739/
    Download Restriction: no
    ---><---

    References listed on IDEAS

    as
    1. Elizabeth J. Williamson & Alex J. Walker & Krishnan Bhaskaran & Seb Bacon & Chris Bates & Caroline E. Morton & Helen J. Curtis & Amir Mehrkar & David Evans & Peter Inglesby & Jonathan Cockburn & Helen, 2020. "Factors associated with COVID-19-related death using OpenSAFELY," Nature, Nature, vol. 584(7821), pages 430-436, August.
    2. Jose L Herrera & Ravi Srinivasan & John S Brownstein & Alison P Galvani & Lauren Ancel Meyers, 2016. "Disease Surveillance on Complex Social Networks," PLOS Computational Biology, Public Library of Science, vol. 12(7), pages 1-16, July.
    3. Dyani Lewis, 2021. "Superspreading drives the COVID pandemic — and could help to tame it," Nature, Nature, vol. 590(7847), pages 544-546, February.
    4. Alison P. Galvani & Robert M. May, 2005. "Dimensions of superspreading," Nature, Nature, vol. 438(7066), pages 293-295, November.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Tim Hulsen, 2022. "Data Science in Healthcare: COVID-19 and Beyond," IJERPH, MDPI, vol. 19(6), pages 1-4, March.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Brandily, Paul & Brébion, Clément & Briole, Simon & Khoury, Laura, 2021. "A poorly understood disease? The impact of COVID-19 on the income gradient in mortality over the course of the pandemic," European Economic Review, Elsevier, vol. 140(C).
    2. Yunhan Huang & Quanyan Zhu, 2022. "Game-Theoretic Frameworks for Epidemic Spreading and Human Decision-Making: A Review," Dynamic Games and Applications, Springer, vol. 12(1), pages 7-48, March.
    3. Borau, Sylvie & Couprie, Hélène & Hopfensitz, Astrid, 2022. "The prosociality of married people: Evidence from a large multinational sample," Journal of Economic Psychology, Elsevier, vol. 92(C).
    4. Shelly J. Robertson & Olivia Bedard & Kristin L. McNally & Carl Shaia & Chad S. Clancy & Matthew Lewis & Rebecca M. Broeckel & Abhilash I. Chiramel & Jeffrey G. Shannon & Gail L. Sturdevant & Rebecca , 2023. "Genetically diverse mouse models of SARS-CoV-2 infection reproduce clinical variation in type I interferon and cytokine responses in COVID-19," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    5. Zeynep Ertem & Dorrie Raymond & Lauren Ancel Meyers, 2018. "Optimal multi-source forecasting of seasonal influenza," PLOS Computational Biology, Public Library of Science, vol. 14(9), pages 1-16, September.
    6. João Faro-Viana & Marie-Louise Bergman & Lígia A. Gonçalves & Nádia Duarte & Teresa P. Coutinho & Patrícia C. Borges & Christian Diwo & Rute Castro & Paula Matoso & Vanessa Malheiro & Ana Brennand & L, 2022. "Population homogeneity for the antibody response to COVID-19 BNT162b2/Comirnaty vaccine is only reached after the second dose across all adult age ranges," Nature Communications, Nature, vol. 13(1), pages 1-8, December.
    7. Dorn, Florian & Lange, Berit & Braml, Martin & Gstrein, David & Nyirenda, John L.Z. & Vanella, Patrizio & Winter, Joachim & Fuest, Clemens & Krause, Gérard, 2023. "The challenge of estimating the direct and indirect effects of COVID-19 interventions – Toward an integrated economic and epidemiological approach," Economics & Human Biology, Elsevier, vol. 49(C).
    8. Denis Mongin & Nils Bürgisser & Gustavo Laurie & Guillaume Schimmel & Diem-Lan Vu & Stephane Cullati & Delphine Sophie Courvoisier, 2023. "Effect of SARS-CoV-2 prior infection and mRNA vaccination on contagiousness and susceptibility to infection," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    9. Yunhwan Kim & Hohyung Ryu & Sunmi Lee, 2018. "Agent-Based Modeling for Super-Spreading Events: A Case Study of MERS-CoV Transmission Dynamics in the Republic of Korea," IJERPH, MDPI, vol. 15(11), pages 1-17, October.
    10. Wang, Jia-Zeng & Peng, Wei-Hua, 2020. "Fluctuations for the outbreak prevalence of the SIR epidemics in complex networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 548(C).
    11. Nishant Raj Kapoor & Ashok Kumar & Anuj Kumar & Dilovan Asaad Zebari & Krishna Kumar & Mazin Abed Mohammed & Alaa S. Al-Waisy & Marwan Ali Albahar, 2022. "Event-Specific Transmission Forecasting of SARS-CoV-2 in a Mixed-Mode Ventilated Office Room Using an ANN," IJERPH, MDPI, vol. 19(24), pages 1-27, December.
    12. Calvin Pozderac & Brian Skinner, 2021. "Superspreading of SARS-CoV-2 in the USA," PLOS ONE, Public Library of Science, vol. 16(3), pages 1-10, March.
    13. Lilith K Whittles & Peter J White & Xavier Didelot, 2019. "A dynamic power-law sexual network model of gonorrhoea outbreaks," PLOS Computational Biology, Public Library of Science, vol. 15(3), pages 1-20, March.
    14. Hiroshi Murayama & Isuzu Nakamoto & Takahiro Tabuchi, 2021. "Social Capital and COVID-19 Deaths: An Ecological Analysis in Japan," IJERPH, MDPI, vol. 18(20), pages 1-9, October.
    15. Ján Palguta & Levínský, René & Škoda, Samuel, 2021. "Do Elections Accelerate the COVID-19 Pandemic? Evidence from a Natural Experiment," GLO Discussion Paper Series 891, Global Labor Organization (GLO).
    16. Eran Mick & Alexandra Tsitsiklis & Natasha Spottiswoode & Saharai Caldera & Paula Hayakawa Serpa & Angela M. Detweiler & Norma Neff & Angela Oliveira Pisco & Lucy M. Li & Hanna Retallack & Kalani Ratn, 2022. "Upper airway gene expression shows a more robust adaptive immune response to SARS-CoV-2 in children," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    17. Luis D’Marco & María Jesús Puchades & Miguel Ángel Serra & Lorena Gandía & Sergio Romero-Alcaide & Elena Giménez-Civera & Pablo Molina & Nayara Panizo & Javier Reque & José Luis Gorriz, 2021. "SARS-CoV-2 vs. Hepatitis Virus Infection Risk in the Hemodialysis Population: What Should We Expect?," IJERPH, MDPI, vol. 18(11), pages 1-6, May.
    18. Uchechukwu Levi Osuagwu & Chikasirimobi G Timothy & Raymond Langsi & Emmanuel K Abu & Piwuna Christopher Goson & Khathutshelo P Mashige & Bernadine Ekpenyong & Godwin O Ovenseri-Ogbomo & Chundung Asab, 2021. "Differences in Perceived Risk of Contracting SARS-CoV-2 during and after the Lockdown in Sub-Saharan African Countries," IJERPH, MDPI, vol. 18(21), pages 1-12, October.
    19. Seoyun Choe & Hee-Sung Kim & Sunmi Lee, 2020. "Exploration of Superspreading Events in 2015 MERS-CoV Outbreak in Korea by Branching Process Models," IJERPH, MDPI, vol. 17(17), pages 1-14, August.
    20. Takanao Tanaka & Shohei Okamoto, 2021. "Increase in suicide following an initial decline during the COVID-19 pandemic in Japan," Nature Human Behaviour, Nature, vol. 5(2), pages 229-238, February.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:gam:jijerp:v:18:y:2021:i:18:p:9739-:d:636443. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: MDPI Indexing Manager (email available below). General contact details of provider: https://www.mdpi.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.