Posterior analysis of rare variants in Gibbs-type species sampling models
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DOI: 10.1016/j.jmva.2014.06.017
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- Antonio Lijoi & Igor Pruenster & Stephen G. Walker, 2008. "Bayesian nonparametric estimators derived from conditional Gibbs structures," ICER Working Papers - Applied Mathematics Series 06-2008, ICER - International Centre for Economic Research.
- Stefano Favaro & Antonio Lijoi & Igor Prünster, 2012. "A new estimator of the discovery probability," DEM Working Papers Series 007, University of Pavia, Department of Economics and Management.
- Stefano Favaro & Antonio Lijoi & Ramsés H. Mena & Igor Prünster, 2009. "Bayesian non‐parametric inference for species variety with a two‐parameter Poisson–Dirichlet process prior," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 71(5), pages 993-1008, November.
- Michele Guindani & Nuno Sepúlveda & Carlos Daniel Paulino & Peter Müller, 2014. "A Bayesian semiparametric approach for the differential analysis of sequence counts data," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 63(3), pages 385-404, April.
- Hofert, Marius, 2011. "Efficiently sampling nested Archimedean copulas," Computational Statistics & Data Analysis, Elsevier, vol. 55(1), pages 57-70, January.
- Stefano Favaro & Antonio Lijoi & Igor Prünster, 2012. "A New Estimator of the Discovery Probability," Biometrics, The International Biometric Society, vol. 68(4), pages 1188-1196, December.
- Antonio Lijoi & Ramsés H. Mena & Igor Prünster, 2007. "Controlling the reinforcement in Bayesian non‐parametric mixture models," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 69(4), pages 715-740, September.
- Stefano Favaro & Antonio Lijoi & Ramsés H. Mena & Igor Prünster, 2009. "Bayesian nonparametric inference for species variety with a two parameter Poisson-Dirichlet process prior," Carlo Alberto Notebooks 123, Collegio Carlo Alberto.
- Antonio Lijoi & Ramsés H. Mena & Igor Prünster, 2007. "A Bayesian Nonparametric Method for Prediction in EST Analysis," ICER Working Papers - Applied Mathematics Series 16-2007, ICER - International Centre for Economic Research.
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Keywords
Bayesian nonparametric inference; Asymptotic credible intervals; Exchangeable random partition; Gibbs-type random probability measure; Index of diversity; Sampling formula; Species sampling problem; Rare variant; Two parameter Poisson–Dirichlet process;All these keywords.
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