Calibration of a bumble bee foraging model using Approximate Bayesian Computation
Author
Abstract
Suggested Citation
DOI: 10.1016/j.ecolmodel.2022.110251
Download full text from publisher
As the access to this document is restricted, you may want to search for a different version of it.
References listed on IDEAS
- Philip D. O'Neill & David J. Balding & Niels G. Becker & Mervi Eerola & Denis Mollison, 2000. "Analyses of infectious disease data from household outbreaks by Markov chain Monte Carlo methods," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 49(4), pages 517-542.
- Forneron, Jean-Jacques & Ng, Serena, 2018.
"The ABC of simulation estimation with auxiliary statistics,"
Journal of Econometrics, Elsevier, vol. 205(1), pages 112-139.
- Jean-Jacques Forneron & Serena Ng, 2015. "The ABC of Simulation Estimation with Auxiliary Statistics," Papers 1501.01265, arXiv.org, revised Oct 2017.
- Becher, M.A. & Grimm, V. & Knapp, J. & Horn, J. & Twiston-Davies, G. & Osborne, J.L., 2016. "BEESCOUT: A model of bee scouting behaviour and a software tool for characterizing nectar/pollen landscapes for BEEHAVE," Ecological Modelling, Elsevier, vol. 340(C), pages 126-133.
- Samuel V J Robinson & Shelley E Hoover & Stephen F Pernal & Ralph V Cartar, 2022. "Optimal distributions of central-place foragers: honey bee foraging in a mass flowering crop," Behavioral Ecology, International Society for Behavioral Ecology, vol. 33(2), pages 386-397.
- Joyce Paul & Marjoram Paul, 2008. "Approximately Sufficient Statistics and Bayesian Computation," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 7(1), pages 1-18, August.
- Rainer Winkelmann, 2008. "Econometric Analysis of Count Data," Springer Books, Springer, edition 0, number 978-3-540-78389-3, September.
- repec:dau:papers:123456789/6334 is not listed on IDEAS
- Nunes Matthew A & Balding David J, 2010. "On Optimal Selection of Summary Statistics for Approximate Bayesian Computation," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 9(1), pages 1-16, September.
- Marc C. Kennedy & Anthony O'Hagan, 2001. "Bayesian calibration of computer models," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 63(3), pages 425-464.
- van der Vaart, Elske & Beaumont, Mark A. & Johnston, Alice S.A. & Sibly, Richard M., 2015. "Calibration and evaluation of individual-based models using Approximate Bayesian Computation," Ecological Modelling, Elsevier, vol. 312(C), pages 182-190.
- Olsson, Ola & Bolin, Arvid & Smith, Henrik G. & Lonsdorf, Eric V., 2015. "Modeling pollinating bee visitation rates in heterogeneous landscapes from foraging theory," Ecological Modelling, Elsevier, vol. 316(C), pages 133-143.
- Paul Fearnhead & Dennis Prangle, 2012. "Constructing summary statistics for approximate Bayesian computation: semi-automatic approximate Bayesian computation," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 74(3), pages 419-474, June.
- Perepolkin, Dmytro & Goodrich, Benjamin & Sahlin, Ullrika, 2021. "Hybrid elicitation and indirect Bayesian inference with quantile-parametrized likelihood," OSF Preprints paby6, Center for Open Science.
Citations
Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
Cited by:
- Rondon, Diego & Mäntyniemi, Samu & Aspi, Jouni & Kvist, Laura & Sillanpää, Mikko J., 2024. "A Bayesian multi-state model with data augmentation for estimating population size and effect of inbreeding on survival," Ecological Modelling, Elsevier, vol. 490(C).
- Walters, Richard J. & Olsson, Ola & Olsson, Peter & Smith, Henrik G., 2024. "Consequences of intraspecific competition for floral resources in heterogeneous landscapes for eusocial bees," Ecological Modelling, Elsevier, vol. 496(C).
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Buzbas, Erkan O. & Rosenberg, Noah A., 2015. "AABC: Approximate approximate Bayesian computation for inference in population-genetic models," Theoretical Population Biology, Elsevier, vol. 99(C), pages 31-42.
- Wilkinson Richard David, 2013. "Approximate Bayesian computation (ABC) gives exact results under the assumption of model error," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 12(2), pages 129-141, May.
- Soubeyrand Samuel & Carpentier Florence & Guiton François & Klein Etienne K., 2013. "Approximate Bayesian computation with functional statistics," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 12(1), pages 17-37, March.
- Creel, Michael & Kristensen, Dennis, 2016.
"On selection of statistics for approximate Bayesian computing (or the method of simulated moments),"
Computational Statistics & Data Analysis, Elsevier, vol. 100(C), pages 99-114.
- Michael Creel & Dennis Kristensen, 2015. "On Selection of Statistics for Approximate Bayesian Computing or the Method of Simulated Moments," UFAE and IAE Working Papers 950.15, Unitat de Fonaments de l'Anàlisi Econòmica (UAB) and Institut d'Anàlisi Econòmica (CSIC), revised 27 Feb 2015.
- Michael Stocks & Mathieu Siol & Martin Lascoux & Stéphane De Mita, 2014. "Amount of Information Needed for Model Choice in Approximate Bayesian Computation," PLOS ONE, Public Library of Science, vol. 9(6), pages 1-13, June.
- Soubeyrand, Samuel & Haon-Lasportes, Emilie, 2015. "Weak convergence of posteriors conditional on maximum pseudo-likelihood estimates and implications in ABC," Statistics & Probability Letters, Elsevier, vol. 107(C), pages 84-92.
- Silk Daniel & Filippi Sarah & Stumpf Michael P. H., 2013. "Optimizing threshold-schedules for sequential approximate Bayesian computation: applications to molecular systems," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 12(5), pages 603-618, October.
- Jonathan U Harrison & Ruth E Baker, 2020. "An automatic adaptive method to combine summary statistics in approximate Bayesian computation," PLOS ONE, Public Library of Science, vol. 15(8), pages 1-21, August.
- Prangle Dennis & Fearnhead Paul & Cox Murray P. & Biggs Patrick J. & French Nigel P., 2014. "Semi-automatic selection of summary statistics for ABC model choice," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 13(1), pages 67-82, February.
- Mikael Sunnåker & Alberto Giovanni Busetto & Elina Numminen & Jukka Corander & Matthieu Foll & Christophe Dessimoz, 2013. "Approximate Bayesian Computation," PLOS Computational Biology, Public Library of Science, vol. 9(1), pages 1-10, January.
- Nakagome Shigeki & Fukumizu Kenji & Mano Shuhei, 2013. "Kernel approximate Bayesian computation in population genetic inferences," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 12(6), pages 667-678, December.
- D.T. Frazier & G.M. Martin & C.P. Robert & J. Rousseau, 2016. "Asymptotic Properties of Approximate Bayesian Computation," Monash Econometrics and Business Statistics Working Papers 18/16, Monash University, Department of Econometrics and Business Statistics.
- McKinley, Trevelyan J. & Ross, Joshua V. & Deardon, Rob & Cook, Alex R., 2014. "Simulation-based Bayesian inference for epidemic models," Computational Statistics & Data Analysis, Elsevier, vol. 71(C), pages 434-447.
- Florian Maire & Nial Friel & Pierre ALQUIER, 2017. "Informed Sub-Sampling MCMC: Approximate Bayesian Inference for Large Datasets," Working Papers 2017-40, Center for Research in Economics and Statistics.
- Carturan, Bruno S. & Siewe, Nourridine & Cobbold, Christina A. & Tyson, Rebecca C., 2023. "Bumble bee pollination and the wildflower/crop trade-off: When do wildflower enhancements improve crop yield?," Ecological Modelling, Elsevier, vol. 484(C).
- Joseph, Julien & Santibáñez, Fernanda & Laguna, María Fabiana & Abramson, Guillermo & Kuperman, Marcelo N. & Garibaldi, Lucas A., 2020. "A spatially extended model to assess the role of landscape structure on the pollination service of Apis mellifera," Ecological Modelling, Elsevier, vol. 431(C).
- Sebastian Calcetero-Vanegas & Andrei L. Badescu & X. Sheldon Lin, 2022. "Effective experience rating for large insurance portfolios via surrogate modeling," Papers 2211.06568, arXiv.org, revised Jun 2024.
- Boucher, Vincent, 2020. "Equilibrium homophily in networks," European Economic Review, Elsevier, vol. 123(C).
- Calcetero Vanegas, Sebastián & Badescu, Andrei L. & Lin, X. Sheldon, 2024. "Effective experience rating for large insurance portfolios via surrogate modeling," Insurance: Mathematics and Economics, Elsevier, vol. 118(C), pages 25-43.
- VanDerHorn, Eric & Mahadevan, Sankaran, 2018. "Bayesian model updating with summarized statistical and reliability data," Reliability Engineering and System Safety, Elsevier, vol. 172(C), pages 12-24.
More about this item
Keywords
Approximate Bayesian Computation; Foraging model; Calibration; Pollination;All these keywords.
Statistics
Access and download statisticsCorrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:eee:ecomod:v:477:y:2023:i:c:s0304380022003490. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Catherine Liu (email available below). General contact details of provider: http://www.journals.elsevier.com/ecological-modelling .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.