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Predicting marine species distributions: Complementarity of food-web and Bayesian hierarchical modelling approaches

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  • Coll, M.
  • Pennino, M. Grazia
  • Steenbeek, J.
  • Sole, J.
  • Bellido, J.M.

Abstract

The spatial prediction of species distributions from survey data is a significant component of spatial planning and the ecosystem-based management approach to marine resources. Statistical analysis of species occurrences and their relationships with associated environmental factors is used to predict how likely a species is to occur in unsampled locations as well as future conditions. However, it is known that environmental factors alone may not be sufficient to account for species distribution. Other ecological processes including species interactions (such as competition and predation), and the impact of human activities, may affect the spatial arrangement of a species. Novel techniques have been developed to take a more holistic approach to estimating species distributions, such as Bayesian Hierarchical Species Distribution model (B-HSD model) and mechanistic food-web models using the new Ecospace Habitat Foraging Capacity model (E-HFC model). Here we used both species distribution and spatial food-web models to predict the distribution of European hake (Merluccius merluccius), anglerfishes (Lophius piscatorius and L. budegassa) and red mullets (Mullus barbatus and M. surmuletus) in an exploited marine ecosystem of the Northwestern Mediterranean Sea. We explored the complementarity of both approaches, comparing results of food-web models previously informed with species distribution modelling results, aside from their applicability as independent techniques. The study shows that both modelling results are positively and significantly correlated with observational data. Predicted spatial patterns of biomasses show positive and significant correlations between modelling approaches and are more similar when using both methodologies in a complementary way: when using the E-HFC model previously informed with the environmental envelopes obtained from the B-HSD model outputs, or directly using niche calculations from B-HSD models to drive the niche priors of E-HFC. We discuss advantages, limitations and future developments of both modelling techniques.

Suggested Citation

  • Coll, M. & Pennino, M. Grazia & Steenbeek, J. & Sole, J. & Bellido, J.M., 2019. "Predicting marine species distributions: Complementarity of food-web and Bayesian hierarchical modelling approaches," Ecological Modelling, Elsevier, vol. 405(C), pages 86-101.
  • Handle: RePEc:eee:ecomod:v:405:y:2019:i:c:p:86-101
    DOI: 10.1016/j.ecolmodel.2019.05.005
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    1. Benjamin S. Halpern & Melanie Frazier & John Potapenko & Kenneth S. Casey & Kellee Koenig & Catherine Longo & Julia Stewart Lowndes & R. Cotton Rockwood & Elizabeth R. Selig & Kimberly A. Selkoe & Sha, 2015. "Spatial and temporal changes in cumulative human impacts on the world’s ocean," Nature Communications, Nature, vol. 6(1), pages 1-7, November.
    2. Heymans, Johanna Jacomina & Coll, Marta & Link, Jason S. & Mackinson, Steven & Steenbeek, Jeroen & Walters, Carl & Christensen, Villy, 2016. "Best practice in Ecopath with Ecosim food-web models for ecosystem-based management," Ecological Modelling, Elsevier, vol. 331(C), pages 173-184.
    3. Jones, Miranda C. & Dye, Stephen R. & Pinnegar, John K. & Warren, Rachel & Cheung, William W.L., 2012. "Modelling commercial fish distributions: Prediction and assessment using different approaches," Ecological Modelling, Elsevier, vol. 225(C), pages 133-145.
    4. Coll, Marta & Palomera, Isabel & Tudela, Sergi & Dowd, Michael, 2008. "Food-web dynamics in the South Catalan Sea ecosystem (NW Mediterranean) for 1978–2003," Ecological Modelling, Elsevier, vol. 217(1), pages 95-116.
    5. Steenbeek, Jeroen & Coll, Marta & Gurney, Leigh & Mélin, Frédéric & Hoepffner, Nicolas & Buszowski, Joe & Christensen, Villy, 2013. "Bridging the gap between ecosystem modeling tools and geographic information systems: Driving a food web model with external spatial–temporal data," Ecological Modelling, Elsevier, vol. 263(C), pages 139-151.
    6. Romagnoni, Giovanni & Mackinson, Steven & Hong, Jiang & Eikeset, Anne Maria, 2015. "The Ecospace model applied to the North Sea: Evaluating spatial predictions with fish biomass and fishing effort data," Ecological Modelling, Elsevier, vol. 300(C), pages 50-60.
    7. Håvard Rue & Sara Martino & Nicolas Chopin, 2009. "Approximate Bayesian inference for latent Gaussian models by using integrated nested Laplace approximations," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 71(2), pages 319-392, April.
    8. David J. Spiegelhalter & Nicola G. Best & Bradley P. Carlin & Angelika Van Der Linde, 2002. "Bayesian measures of model complexity and fit," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 64(4), pages 583-639, October.
    9. Christensen, Villy & Ferdaña, Zach & Steenbeek, Jeroen, 2009. "Spatial optimization of protected area placement incorporating ecological, social and economical criteria," Ecological Modelling, Elsevier, vol. 220(19), pages 2583-2593.
    10. Paloma Martín & Ana Sabatés & Josep Lloret & Javier Martin-Vide, 2012. "Climate modulation of fish populations: the role of the Western Mediterranean Oscillation (WeMO) in sardine (Sardina pilchardus) and anchovy (Engraulis encrasicolus) production in the north-western Me," Climatic Change, Springer, vol. 110(3), pages 925-939, February.
    11. Mackinson, S. & Daskalov, G. & Heymans, J.J. & Neira, S. & Arancibia, H. & Zetina-Rejón, M. & Jiang, H. & Cheng, H.Q. & Coll, M. & Arreguin-Sanchez, F. & Keeble, K. & Shannon, L., 2009. "Which forcing factors fit? Using ecosystem models to investigate the relative influence of fishing and changes in primary productivity on the dynamics of marine ecosystems," Ecological Modelling, Elsevier, vol. 220(21), pages 2972-2987.
    12. Finn Lindgren & Håvard Rue & Johan Lindström, 2011. "An explicit link between Gaussian fields and Gaussian Markov random fields: the stochastic partial differential equation approach," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 73(4), pages 423-498, September.
    13. Coll, Marta & Steenbeek, Jeroen & Sole, Jordi & Palomera, Isabel & Christensen, Villy, 2016. "Modelling the cumulative spatial–temporal effects of environmental drivers and fishing in a NW Mediterranean marine ecosystem," Ecological Modelling, Elsevier, vol. 331(C), pages 100-114.
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    2. Nascimento, Marcela C. & Husson, Berengere & Guillet, Lilia & Pedersen, Torstein, 2023. "Modelling the spatial shifts of functional groups in the Barents Sea using a climate-driven spatial food web model," Ecological Modelling, Elsevier, vol. 481(C).
    3. Püts, Miriam & Taylor, Marc & Núñez-Riboni, Ismael & Steenbeek, Jeroen & Stäbler, Moritz & Möllmann, Christian & Kempf, Alexander, 2020. "Insights on integrating habitat preferences in process-oriented ecological models – a case study of the southern North Sea," Ecological Modelling, Elsevier, vol. 431(C).
    4. Van Niekerk, Janet & Krainski, Elias & Rustand, Denis & Rue, Håvard, 2023. "A new avenue for Bayesian inference with INLA," Computational Statistics & Data Analysis, Elsevier, vol. 181(C).
    5. Zhang, Quanzhong & Wei, Haiyan & Liu, Jing & Zhao, Zefang & Ran, Qiao & Gu, Wei, 2021. "A Bayesian network with fuzzy mathematics for species habitat suitability analysis: A case with limited Angelica sinensis (Oliv.) Diels data," Ecological Modelling, Elsevier, vol. 450(C).
    6. Xavier Barber & David Conesa & Antonio López-Quílez & Joaquín Martínez-Minaya & Iosu Paradinas & Maria Grazia Pennino, 2021. "Incorporating Biotic Information in Species Distribution Models: A Coregionalized Approach," Mathematics, MDPI, vol. 9(4), pages 1-12, February.

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