IDEAS home Printed from https://ideas.repec.org/a/eee/csdana/v113y2017icp177-193.html
   My bibliography  Save this article

Bayesian two-component measurement error modelling for survival analysis using INLA—A case study on cardiovascular disease mortality in Switzerland

Author

Listed:
  • Muff, Stefanie
  • Ott, Manuela
  • Braun, Julia
  • Held, Leonhard

Abstract

Measurement error (ME) in explanatory variables is a common problem in regression and survival analysis, as it may cause bias in the estimated parameters. It is shown how the integrated nested Laplace approximations (INLA) method can handle classical and Berkson ME in a single explanatory variable, illustrated for the case of a Weibull regression model. To this end, a two-component error model to account for a mix of Berkson and classical ME in a single covariate is introduced and applied to a study on cardiovascular disease (CVD) mortality in Switzerland. In particular, the model was used to correct for error in the self-reported mean daily number of cigarettes smoked, as well as in reportings of systolic blood pressure (SBP). Both variables suffer from classical error induced by an imprecision, either due to misremembering of study participants (cigarettes), or due to practical difficulties in obtaining accurate measurements (SBP), but also from a Berkson-type error that is induced by a rounding behaviour, also known as digit preference. In both cases, the effect estimates increased when the error was taken into account. Therefore, an important conclusion is that ME modelling in survival analysis is relevant, and a ready-to-use Bayesian solution including R-code is provided.

Suggested Citation

  • Muff, Stefanie & Ott, Manuela & Braun, Julia & Held, Leonhard, 2017. "Bayesian two-component measurement error modelling for survival analysis using INLA—A case study on cardiovascular disease mortality in Switzerland," Computational Statistics & Data Analysis, Elsevier, vol. 113(C), pages 177-193.
  • Handle: RePEc:eee:csdana:v:113:y:2017:i:c:p:177-193
    DOI: 10.1016/j.csda.2017.03.001
    as

    Download full text from publisher

    File URL: http://www.sciencedirect.com/science/article/pii/S0167947317300452
    Download Restriction: Full text for ScienceDirect subscribers only.

    File URL: https://libkey.io/10.1016/j.csda.2017.03.001?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Sara Martino & Rupali Akerkar & Håvard Rue, 2011. "Approximate Bayesian Inference for Survival Models," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 38(3), pages 514-528, September.
    2. Martins, Thiago G. & Simpson, Daniel & Lindgren, Finn & Rue, Håvard, 2013. "Bayesian computing with INLA: New features," Computational Statistics & Data Analysis, Elsevier, vol. 67(C), pages 68-83.
    3. Håvard Rue & Sara Martino & Nicolas Chopin, 2009. "Approximate Bayesian inference for latent Gaussian models by using integrated nested Laplace approximations," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 71(2), pages 319-392, April.
    4. Helmut Küchenhoff & Samuel M. Mwalili & Emmanuel Lesaffre, 2006. "A General Method for Dealing with Misclassification in Regression: The Misclassification SIMEX," Biometrics, The International Biometric Society, vol. 62(1), pages 85-96, March.
    5. Mahlet G. Tadesse & Joseph G. Ibrahim & Robert Gentleman & Sabina Chiaretti & Jerome Ritz & Robin Foa, 2005. "Bayesian Error-in-Variable Survival Model for the Analysis of GeneChip Arrays," Biometrics, The International Biometric Society, vol. 61(2), pages 488-497, June.
    6. Stefanie Muff & Andrea Riebler & Leonhard Held & Håvard Rue & Philippe Saner, 2015. "Bayesian analysis of measurement error models using integrated nested Laplace approximations," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 64(2), pages 231-252, February.
    7. Thomas Augustin, 2004. "An Exact Corrected Log‐Likelihood Function for Cox's Proportional Hazards Model under Measurement Error and Some Extensions," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 31(1), pages 43-50, March.
    8. Chris T. Volinsky & Adrian E. Raftery, 2000. "Bayesian Information Criterion for Censored Survival Models," Biometrics, The International Biometric Society, vol. 56(1), pages 256-262, March.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. David Imo & Holger Dressel & Katarzyna Byber & Christine Hitzke & Matthias Bopp & Marion Maggi & Stephan Bose-O’Reilly & Leonhard Held & Stefanie Muff, 2018. "Predicted Mercury Soil Concentrations from a Kriging Approach for Improved Human Health Risk Assessment," IJERPH, MDPI, vol. 15(7), pages 1-14, June.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Tyler A. Scott & Nicola Ulibarri & Ryan P. Scott, 2020. "Stakeholder involvement in collaborative regulatory processes: Using automated coding to track attendance and actions," Regulation & Governance, John Wiley & Sons, vol. 14(2), pages 219-237, April.
    2. Nikoline N. Knudsen & Jörg Schullehner & Birgitte Hansen & Lisbeth F. Jørgensen & Søren M. Kristiansen & Denitza D. Voutchkova & Thomas A. Gerds & Per K. Andersen & Kristine Bihrmann & Morten Grønbæk , 2017. "Lithium in Drinking Water and Incidence of Suicide: A Nationwide Individual-Level Cohort Study with 22 Years of Follow-Up," IJERPH, MDPI, vol. 14(6), pages 1-13, June.
    3. Scott, Ryan P. & Scott, Tyler A., 2019. "Investing in collaboration for safety: Assessing grants to states for oil and gas distribution pipeline safety program enhancement," Energy Policy, Elsevier, vol. 124(C), pages 332-345.
    4. Cho, Daegon & Hwang, Youngdeok & Park, Jongwon, 2018. "More buzz, more vibes: Impact of social media on concert distribution," Journal of Economic Behavior & Organization, Elsevier, vol. 156(C), pages 103-113.
    5. Brown, Paul T. & Joshi, Chaitanya & Joe, Stephen & Rue, Håvard, 2021. "A novel method of marginalisation using low discrepancy sequences for integrated nested Laplace approximations," Computational Statistics & Data Analysis, Elsevier, vol. 157(C).
    6. Mayer Alvo & Jingrui Mu, 2023. "COVID-19 Data Analysis Using Bayesian Models and Nonparametric Geostatistical Models," Mathematics, MDPI, vol. 11(6), pages 1-13, March.
    7. David Jiménez-Hernández & Víctor González-Calatayud & Ana Torres-Soto & Asunción Martínez Mayoral & Javier Morales, 2020. "Digital Competence of Future Secondary School Teachers: Differences According to Gender, Age, and Branch of Knowledge," Sustainability, MDPI, vol. 12(22), pages 1-16, November.
    8. Gressani, Oswaldo & Lambert, Philippe, 2016. "Fast Bayesian inference in semi-parametric P-spline cure survival models using Laplace approximations," LIDAM Discussion Papers ISBA 2016041, Université catholique de Louvain, Institute of Statistics, Biostatistics and Actuarial Sciences (ISBA).
    9. Aaron Osgood‐Zimmerman & Jon Wakefield, 2023. "A Statistical Review of Template Model Builder: A Flexible Tool for Spatial Modelling," International Statistical Review, International Statistical Institute, vol. 91(2), pages 318-342, August.
    10. Luca Grassetti & Laura Rizzi, 2019. "The determinants of individual health care expenditures in the Italian region of Friuli Venezia Giulia: evidence from a hierarchical spatial model estimation," Empirical Economics, Springer, vol. 56(3), pages 987-1009, March.
    11. Gressani, Oswaldo & Lambert, Philippe, 2021. "Laplace approximations for fast Bayesian inference in generalized additive models based on P-splines," Computational Statistics & Data Analysis, Elsevier, vol. 154(C).
    12. Ferreira, Marco A.R. & Porter, Erica M. & Franck, Christopher T., 2021. "Fast and scalable computations for Gaussian hierarchical models with intrinsic conditional autoregressive spatial random effects," Computational Statistics & Data Analysis, Elsevier, vol. 162(C).
    13. Luis A. Barboza & Julien Emile-Geay & Bo Li & Wan He, 2019. "Efficient Reconstructions of Common Era Climate via Integrated Nested Laplace Approximations," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 24(3), pages 535-554, September.
    14. Sameh Abdulah & Yuxiao Li & Jian Cao & Hatem Ltaief & David E. Keyes & Marc G. Genton & Ying Sun, 2023. "Large‐scale environmental data science with ExaGeoStatR," Environmetrics, John Wiley & Sons, Ltd., vol. 34(1), February.
    15. John M. Humphreys & Robert B. Srygley & David H. Branson, 2022. "Geographic Variation in Migratory Grasshopper Recruitment under Projected Climate Change," Geographies, MDPI, vol. 2(1), pages 1-19, January.
    16. Janet Niekerk & Haakon Bakka & Håvard Rue, 2023. "Stable Non-Linear Generalized Bayesian Joint Models for Survival-Longitudinal Data," Sankhya A: The Indian Journal of Statistics, Springer;Indian Statistical Institute, vol. 85(1), pages 102-128, February.
    17. John M. Humphreys, 2022. "Amplification in Time and Dilution in Space: Partitioning Spatiotemporal Processes to Assess the Role of Avian-Host Phylodiversity in Shaping Eastern Equine Encephalitis Virus Distribution," Geographies, MDPI, vol. 2(3), pages 1-16, July.
    18. Matthew Yap & Matthew Tuson & Berwin Turlach & Bryan Boruff & David Whyatt, 2021. "Modelling the Relationship between Rainfall and Mental Health Using Different Spatial and Temporal Units," IJERPH, MDPI, vol. 18(3), pages 1-15, February.
    19. Humphreys, John M. & Srygley, Robert B. & Lawton, Douglas & Hudson, Amy R. & Branson, David H., 2022. "Grasshoppers exhibit asynchrony and spatial non-stationarity in response to the El Niño/Southern and Pacific Decadal Oscillations," Ecological Modelling, Elsevier, vol. 471(C).
    20. Gressani, Oswaldo & Lambert, Philippe, 2018. "Fast Bayesian inference using Laplace approximations in a flexible promotion time cure model based on P-splines," Computational Statistics & Data Analysis, Elsevier, vol. 124(C), pages 151-167.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:eee:csdana:v:113:y:2017:i:c:p:177-193. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Catherine Liu (email available below). General contact details of provider: http://www.elsevier.com/locate/csda .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.