Equilibrium switching and mathematical properties of nonlinear interaction networks with concurrent antagonism and self-stimulation
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DOI: 10.1016/j.chaos.2015.01.018
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- Kyung H Kim & Herbert M Sauro, 2012. "Adjusting Phenotypes by Noise Control," PLOS Computational Biology, Public Library of Science, vol. 8(1), pages 1-14, January.
- Noah J Cowan & Erick J Chastain & Daril A Vilhena & James S Freudenberg & Carl T Bergstrom, 2012. "Nodal Dynamics, Not Degree Distributions, Determine the Structural Controllability of Complex Networks," PLOS ONE, Public Library of Science, vol. 7(6), pages 1-5, June.
- Michael B. Elowitz & Stanislas Leibler, 2000. "A synthetic oscillatory network of transcriptional regulators," Nature, Nature, vol. 403(6767), pages 335-338, January.
- Kuznetsov, A. & Afraimovich, V., 2012. "Heteroclinic cycles in the repressilator model," Chaos, Solitons & Fractals, Elsevier, vol. 45(5), pages 660-665.
- Eric H. Davidson, 2010. "Emerging properties of animal gene regulatory networks," Nature, Nature, vol. 468(7326), pages 911-920, December.
- Todd S. Macfarlan & Wesley D. Gifford & Shawn Driscoll & Karen Lettieri & Helen M. Rowe & Dario Bonanomi & Amy Firth & Oded Singer & Didier Trono & Samuel L. Pfaff, 2012. "Embryonic stem cell potency fluctuates with endogenous retrovirus activity," Nature, Nature, vol. 487(7405), pages 57-63, July.
- Hannah H. Chang & Martin Hemberg & Mauricio Barahona & Donald E. Ingber & Sui Huang, 2008. "Transcriptome-wide noise controls lineage choice in mammalian progenitor cells," Nature, Nature, vol. 453(7194), pages 544-547, May.
- Shinya Yamanaka, 2009. "Elite and stochastic models for induced pluripotent stem cell generation," Nature, Nature, vol. 460(7251), pages 49-52, July.
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