Correlation Between Gene Expression Levels and Limitations of the Empirical Bayes Methodology for Finding Differentially Expressed Genes
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DOI: 10.2202/1544-6115.1157
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Cited by:
- Li, Feng & Seillier-Moiseiwitsch, Françoise & Korostyshevskiy, Valeriy R., 2011. "Region-based statistical analysis of 2D PAGE images," Computational Statistics & Data Analysis, Elsevier, vol. 55(11), pages 3059-3072, November.
- Jian Zhang, 2010. "A Bayesian model for biclustering with applications," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 59(4), pages 635-656, August.
- T. Tony Cai & Weidong Liu, 2016. "Large-Scale Multiple Testing of Correlations," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 111(513), pages 229-240, March.
- Frank Emmert-Streib & Galina V Glazko, 2011. "Pathway Analysis of Expression Data: Deciphering Functional Building Blocks of Complex Diseases," PLOS Computational Biology, Public Library of Science, vol. 7(5), pages 1-6, May.
- Lim Johan & Kim Jayeon & Kim Byung Soo, 2010. "An Alternative Model of Type A Dependence in a Gene Set of Correlated Genes," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 9(1), pages 1-12, January.
- Sairam Rayaprolu & Zhiyi Chi, 2021. "False Discovery Variance Reduction in Large Scale Simultaneous Hypothesis Tests," Methodology and Computing in Applied Probability, Springer, vol. 23(3), pages 711-733, September.
- Wenguang Sun & T. Tony Cai, 2009. "Large‐scale multiple testing under dependence," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 71(2), pages 393-424, April.
- Bickel David R., 2012. "Empirical Bayes Interval Estimates that are Conditionally Equal to Unadjusted Confidence Intervals or to Default Prior Credibility Intervals," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 11(3), pages 1-34, February.
- David R. Bickel, 2013. "Minimax-Optimal Strength of Statistical Evidence for a Composite Alternative Hypothesis," International Statistical Review, International Statistical Institute, vol. 81(2), pages 188-206, August.
- Gordon, Alexander & Chen, Linlin & Glazko, Galina & Yakovlev, Andrei, 2009. "Balancing type one and two errors in multiple testing for differential expression of genes," Computational Statistics & Data Analysis, Elsevier, vol. 53(5), pages 1622-1629, March.
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Keywords
microarray analysis; gene expression; two-sample tests; empirical Bayes method; correlated data; resampling techniques;All these keywords.
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