IDEAS home Printed from https://ideas.repec.org/a/bla/biomet/v72y2016i4p1305-1314.html
   My bibliography  Save this article

A generalized abundance index for seasonal invertebrates

Author

Listed:
  • Emily B. Dennis
  • Byron J. T. Morgan
  • Stephen N. Freeman
  • Tom M. Brereton
  • David B. Roy

Abstract

At a time of climate change and major loss of biodiversity, it is important to have efficient tools for monitoring populations. In this context, animal abundance indices play an important rôle. In producing indices for invertebrates, it is important to account for variation in counts within seasons. Two new methods for describing seasonal variation in invertebrate counts have recently been proposed; one is nonparametric, using generalized additive models, and the other is parametric, based on stopover models. We present a novel generalized abundance index which encompasses both parametric and nonparametric approaches. It is extremely efficient to compute this index due to the use of concentrated likelihood techniques. This has particular relevance for the analysis of data from long‐term extensive monitoring schemes with records for many species and sites, for which existing modeling techniques can be prohibitively time consuming. Performance of the index is demonstrated by several applications to UK Butterfly Monitoring Scheme data. We demonstrate the potential for new insights into both phenology and spatial variation in seasonal patterns from parametric modeling and the incorporation of covariate dependence, which is relevant for both monitoring and conservation. Associated R code is available on the journal website.

Suggested Citation

  • Emily B. Dennis & Byron J. T. Morgan & Stephen N. Freeman & Tom M. Brereton & David B. Roy, 2016. "A generalized abundance index for seasonal invertebrates," Biometrics, The International Biometric Society, vol. 72(4), pages 1305-1314, December.
  • Handle: RePEc:bla:biomet:v:72:y:2016:i:4:p:1305-1314
    DOI: 10.1111/biom.12506
    as

    Download full text from publisher

    File URL: https://doi.org/10.1111/biom.12506
    Download Restriction: no

    File URL: https://libkey.io/10.1111/biom.12506?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Peter Rothery & David Roy, 2001. "Application of generalized additive models to butterfly transect count data," Journal of Applied Statistics, Taylor & Francis Journals, vol. 28(7), pages 897-909.
    2. E. A. Catchpole & P. M. Kgosi & B. J. T. Morgan, 2001. "On the Near-Singularity of Models for Animal Recovery Data," Biometrics, The International Biometric Society, vol. 57(3), pages 720-726, September.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Dennis, Emily B. & Kéry, Marc & Morgan, Byron J.T. & Coray, Armin & Schaub, Michael & Baur, Bruno, 2021. "Integrated modelling of insect population dynamics at two temporal scales," Ecological Modelling, Elsevier, vol. 441(C).
    2. Eleni Matechou & Stephen N. Freeman & Richard Comont, 2018. "Caste-Specific Demography and Phenology in Bumblebees: Modelling BeeWalk Data," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 23(4), pages 427-445, December.
    3. Stephen N. Freeman & Nicholas J. B. Isaac & Panagiotis Besbeas & Emily B. Dennis & Byron J. T. Morgan, 2021. "A Generic Method for Estimating and Smoothing Multispecies Biodiversity Indicators Using Intermittent Data," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 26(1), pages 71-89, March.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Rachel S. McCrea & Byron J. T. Morgan, 2011. "Multistate Mark–Recapture Model Selection Using Score Tests," Biometrics, The International Biometric Society, vol. 67(1), pages 234-241, March.
    2. P. Besbeas & S. N. Freeman & B. J. T. Morgan & E. A. Catchpole, 2002. "Integrating Mark–Recapture–Recovery and Census Data to Estimate Animal Abundance and Demographic Parameters," Biometrics, The International Biometric Society, vol. 58(3), pages 540-547, September.
    3. E. A. Catchpole & B. J. T. Morgan & A. Viallefont, 2002. "Solving problems in parameter redundancy using computer algebra," Journal of Applied Statistics, Taylor & Francis Journals, vol. 29(1-4), pages 625-636.
    4. Diana J. Cole, 2019. "Parameter redundancy and identifiability in hidden Markov models," METRON, Springer;Sapienza Università di Roma, vol. 77(2), pages 105-118, August.
    5. S. C. Barry & S. P. Brooks & E. A. Catchpole & B. J. T. Morgan, 2003. "The Analysis of Ring-Recovery Data Using Random Effects," Biometrics, The International Biometric Society, vol. 59(1), pages 54-65, March.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:bla:biomet:v:72:y:2016:i:4:p:1305-1314. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Wiley Content Delivery (email available below). General contact details of provider: http://www.blackwellpublishing.com/journal.asp?ref=0006-341X .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.