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HAPBLOCK: Stata module to perform haplotype analysis to identify the edges of haplotype blocks

Author

Listed:
  • Adrian Mander

Programming Language

Stata

Abstract

This command systematically fits a series of hapipf log-linear models that attempts to find the edge of areas containing high LD within a set of loci. The log-linear model is fitted using iterative proportional fitting which is available using ssc and is called ipf (version 1.36 or later). Additionally, the user will also have to install hapipf (version 1.44 or later). This algorithm can handle very large contingency tables and converges to maximum likelihood estimates even when the likelihood is badly behaved.

Suggested Citation

  • Adrian Mander, 2004. "HAPBLOCK: Stata module to perform haplotype analysis to identify the edges of haplotype blocks," Statistical Software Components S438902, Boston College Department of Economics, revised 01 Jun 2005.
    • Handle: RePEc:boc:bocode:s438902
    Note: This module may be installed from within Stata by typing "ssc install hapblock". The module is made available under terms of the GPL v3 (https://www.gnu.org/licenses/gpl-3.0.txt). Windows users should not attempt to download these files with a web browser.
    as

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    File URL: http://fmwww.bc.edu/repec/bocode/h/hapblock.ado
    File Function: program code
    Download Restriction: no
    File URL: http://fmwww.bc.edu/repec/bocode/h/hapblock.hlp
    File Function: help file
    Download Restriction: no
    File URL: http://fmwww.bc.edu/repec/bocode/l/llmoSNPhb.pdf
    File Function: documentation
    Download Restriction: no
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    More about this item

    Keywords

    haplotype analysis; Stata;

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