IDEAS home Printed from https://ideas.repec.org/a/spr/psycho/v79y2014i2p185-209.html
   My bibliography  Save this article

Hierarchical Approximate Bayesian Computation

Author

Listed:
  • Brandon Turner
  • Trisha Zandt

Abstract

Approximate Bayesian computation (ABC) is a powerful technique for estimating the posterior distribution of a model’s parameters. It is especially important when the model to be fit has no explicit likelihood function, which happens for computational (or simulation-based) models such as those that are popular in cognitive neuroscience and other areas in psychology. However, ABC is usually applied only to models with few parameters. Extending ABC to hierarchical models has been difficult because high-dimensional hierarchical models add computational complexity that conventional ABC cannot accommodate. In this paper, we summarize some current approaches for performing hierarchical ABC and introduce a new algorithm called Gibbs ABC. This new algorithm incorporates well-known Bayesian techniques to improve the accuracy and efficiency of the ABC approach for estimation of hierarchical models. We then use the Gibbs ABC algorithm to estimate the parameters of two models of signal detection, one with and one without a tractable likelihood function. Copyright The Psychometric Society 2014

Suggested Citation

  • Brandon Turner & Trisha Zandt, 2014. "Hierarchical Approximate Bayesian Computation," Psychometrika, Springer;The Psychometric Society, vol. 79(2), pages 185-209, April.
    • Handle: RePEc:spr:psycho:v:79:y:2014:i:2:p:185-209
    DOI: 10.1007/s11336-013-9381-x
    as

    Download full text from publisher

    File URL: http://hdl.handle.net/10.1007/s11336-013-9381-x
    Download Restriction: Access to full text is restricted to subscribers.
    File URL: https://libkey.io/10.1007/s11336-013-9381-x?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Jeffrey Rouder & Dongchu Sun & Paul Speckman & Jun Lu & Duo Zhou, 2003. "A hierarchical bayesian statistical framework for response time distributions," Psychometrika, Springer;The Psychometric Society, vol. 68(4), pages 589-606, December.
    2. W. R. Gilks & P. Wild, 1992. "Adaptive Rejection Sampling for Gibbs Sampling," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 41(2), pages 337-348, June.
    3. Paul Fearnhead & Dennis Prangle, 2012. "Constructing summary statistics for approximate Bayesian computation: semi-automatic approximate Bayesian computation," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 74(3), pages 419-474, June.
    4. Mark A. Beaumont & Jean-Marie Cornuet & Jean-Michel Marin & Christian P. Robert, 2009. "Adaptive approximate Bayesian computation," Biometrika, Biometrika Trust, vol. 96(4), pages 983-990.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Hazra, Indranil & Pandey, Mahesh D. & Manzana, Noldainerick, 2020. "Approximate Bayesian computation (ABC) method for estimating parameters of the gamma process using noisy data," Reliability Engineering and System Safety, Elsevier, vol. 198(C).
    2. Inhan Kang & Dylan Molenaar & Roger Ratcliff, 2023. "A Modeling Framework to Examine Psychological Processes Underlying Ordinal Responses and Response Times of Psychometric Data," Psychometrika, Springer;The Psychometric Society, vol. 88(3), pages 940-974, September.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Xing Ju Lee & Christopher C. Drovandi & Anthony N. Pettitt, 2015. "Model choice problems using approximate Bayesian computation with applications to pathogen transmission data sets," Biometrics, The International Biometric Society, vol. 71(1), pages 198-207, March.
    2. McKinley, Trevelyan J. & Ross, Joshua V. & Deardon, Rob & Cook, Alex R., 2014. "Simulation-based Bayesian inference for epidemic models," Computational Statistics & Data Analysis, Elsevier, vol. 71(C), pages 434-447.
    3. Li, J. & Nott, D.J. & Fan, Y. & Sisson, S.A., 2017. "Extending approximate Bayesian computation methods to high dimensions via a Gaussian copula model," Computational Statistics & Data Analysis, Elsevier, vol. 106(C), pages 77-89.
    4. Gael M. Martin & David T. Frazier & Christian P. Robert, 2020. "Computing Bayes: Bayesian Computation from 1763 to the 21st Century," Monash Econometrics and Business Statistics Working Papers 14/20, Monash University, Department of Econometrics and Business Statistics.
    5. Pierre-Olivier Goffard & Patrick Laub, 2021. "Approximate Bayesian Computations to fit and compare insurance loss models," Working Papers hal-02891046, HAL.
    6. Bertl Johanna & Ewing Gregory & Kosiol Carolin & Futschik Andreas, 2017. "Approximate maximum likelihood estimation for population genetic inference," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 16(5-6), pages 291-312, December.
    7. Anthony Ebert & Ritabrata Dutta & Kerrie Mengersen & Antonietta Mira & Fabrizio Ruggeri & Paul Wu, 2021. "Likelihood‐free parameter estimation for dynamic queueing networks: Case study of passenger flow in an international airport terminal," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 70(3), pages 770-792, June.
    8. Gael M. Martin & David T. Frazier & Christian P. Robert, 2021. "Approximating Bayes in the 21st Century," Monash Econometrics and Business Statistics Working Papers 24/21, Monash University, Department of Econometrics and Business Statistics.
    9. Alexander Buchholz & Nicolas CHOPIN, 2017. "Improving approximate Bayesian computation via quasi Monte Carlo," Working Papers 2017-37, Center for Research in Economics and Statistics.
    10. Brenda N Vo & Christopher C Drovandi & Anthony N Pettitt & Graeme J Pettet, 2015. "Melanoma Cell Colony Expansion Parameters Revealed by Approximate Bayesian Computation," PLOS Computational Biology, Public Library of Science, vol. 11(12), pages 1-22, December.
    11. Frazier, David T. & Maneesoonthorn, Worapree & Martin, Gael M. & McCabe, Brendan P.M., 2019. "Approximate Bayesian forecasting," International Journal of Forecasting, Elsevier, vol. 35(2), pages 521-539.
    12. Buzbas, Erkan O. & Rosenberg, Noah A., 2015. "AABC: Approximate approximate Bayesian computation for inference in population-genetic models," Theoretical Population Biology, Elsevier, vol. 99(C), pages 31-42.
    13. Genya Kobayashi & Kazuhiko Kakamu, 2019. "Approximate Bayesian computation for Lorenz curves from grouped data," Computational Statistics, Springer, vol. 34(1), pages 253-279, March.
    14. Dyer, Joel & Cannon, Patrick & Farmer, J. Doyne & Schmon, Sebastian M., 2024. "Black-box Bayesian inference for agent-based models," Journal of Economic Dynamics and Control, Elsevier, vol. 161(C).
    15. Kobayashi, Genya, 2014. "A transdimensional approximate Bayesian computation using the pseudo-marginal approach for model choice," Computational Statistics & Data Analysis, Elsevier, vol. 80(C), pages 167-183.
    16. Creel, Michael & Kristensen, Dennis, 2015. "ABC of SV: Limited information likelihood inference in stochastic volatility jump-diffusion models," Journal of Empirical Finance, Elsevier, vol. 31(C), pages 85-108.
    17. Gareth W. Peters & Efstathios Panayi & Francois Septier, 2015. "SMC-ABC methods for the estimation of stochastic simulation models of the limit order book," Papers 1504.05806, arXiv.org.
    18. Mikael Sunnåker & Alberto Giovanni Busetto & Elina Numminen & Jukka Corander & Matthieu Foll & Christophe Dessimoz, 2013. "Approximate Bayesian Computation," PLOS Computational Biology, Public Library of Science, vol. 9(1), pages 1-10, January.
    19. Chiachío, Manuel & Saleh, Ali & Naybour, Susannah & Chiachío, Juan & Andrews, John, 2022. "Reduction of Petri net maintenance modeling complexity via Approximate Bayesian Computation," Reliability Engineering and System Safety, Elsevier, vol. 222(C).
    20. Warne, David J. & Baker, Ruth E. & Simpson, Matthew J., 2018. "Multilevel rejection sampling for approximate Bayesian computation," Computational Statistics & Data Analysis, Elsevier, vol. 124(C), pages 71-86.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:spr:psycho:v:79:y:2014:i:2:p:185-209. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.springer.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.