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Bayesian model-based clustering for longitudinal ordinal data

Author

Listed:
  • Roy Costilla

    (The University of Queensland)

  • Ivy Liu

    (Victoria University of Wellington)

  • Richard Arnold

    (Victoria University of Wellington)

  • Daniel Fernández

    (Victoria University of Wellington
    Parc Sanitari Sant Joan de Déu, CIBERSAM)

Abstract

Traditional cluster analysis methods used in ordinal data, for instance k-means and hierarchical clustering, are mostly heuristic and lack statistical inference tools to compare among competing models. To address this we propose a latent transitional model, a finite mixture model that includes both observed and latent covariates and apply it for the first time to the case of longitudinal ordinal data. This model-based clustering model is an extension of the proportional odds model and includes a first-order transitional term, occasion effects and interactions which provide flexible ways to capture different time patterns by cluster as well as time-heterogeneous transitions. We estimate model parameters within a Bayesian setting using a Markov chain Monte Carlo scheme and block-wise Metropolis–Hastings sampling. We illustrate the model using 2001–2011 self-reported health status (SRHS) from the Household, Income and Labour Dynamics in Australia survey. SRHS is recorded as an ordinal variable with five levels: poor, fair, good, very good and excellent. Using the Widely Applicable Information Criterion for model comparison, we find evidence for six latent groups. Transitions in the original data and the estimated groups are visualized using heatmaps.

Suggested Citation

  • Roy Costilla & Ivy Liu & Richard Arnold & Daniel Fernández, 2019. "Bayesian model-based clustering for longitudinal ordinal data," Computational Statistics, Springer, vol. 34(3), pages 1015-1038, September.
    • Handle: RePEc:spr:compst:v:34:y:2019:i:3:d:10.1007_s00180-019-00872-4
    DOI: 10.1007/s00180-019-00872-4
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    References listed on IDEAS

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    1. Fernández, D. & Arnold, R. & Pledger, S., 2016. "Mixture-based clustering for the ordered stereotype model," Computational Statistics & Data Analysis, Elsevier, vol. 93(C), pages 46-75.
    2. Eleni Matechou & Ivy Liu & Daniel Fernández & Miguel Farias & Bergljot Gjelsvik, 2016. "Biclustering Models for Two-Mode Ordinal Data," Psychometrika, Springer;The Psychometric Society, vol. 81(3), pages 611-624, September.
    3. Shirley Pledger, 2000. "Unified Maximum Likelihood Estimates for Closed Capture–Recapture Models Using Mixtures," Biometrics, The International Biometric Society, vol. 56(2), pages 434-442, June.
    4. Sylvia Frühwirth‐Schnatter & Christoph Pamminger & Andrea Weber & Rudolf Winter‐Ebmer, 2012. "Labor market entry and earnings dynamics: Bayesian inference using mixtures‐of‐experts Markov chain clustering," Journal of Applied Econometrics, John Wiley & Sons, Ltd., vol. 27(7), pages 1116-1137, November.
    5. Matthew Stephens, 2000. "Dealing with label switching in mixture models," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 62(4), pages 795-809.
    6. Wilkinson, Leland & Friendly, Michael, 2009. "The History of the Cluster Heat Map," The American Statistician, American Statistical Association, vol. 63(2), pages 179-184.
    7. repec:dau:papers:123456789/6069 is not listed on IDEAS
    8. Sylvia. Richardson & Peter J. Green, 1997. "On Bayesian Analysis of Mixtures with an Unknown Number of Components (with discussion)," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 59(4), pages 731-792.
    9. Ivy Liu & Alan Agresti, 2005. "The analysis of ordered categorical data: An overview and a survey of recent developments," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 14(1), pages 1-73, June.
    10. Mathias Drton & Martyn Plummer, 2017. "A Bayesian information criterion for singular models," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 79(2), pages 323-380, March.
    11. David J. Spiegelhalter & Nicola G. Best & Bradley P. Carlin & Angelika Van Der Linde, 2002. "Bayesian measures of model complexity and fit," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 64(4), pages 583-639, October.
    12. Richard Arnold & Yu Hayakawa & Paul Yip, 2010. "Capture–Recapture Estimation Using Finite Mixtures of Arbitrary Dimension," Biometrics, The International Biometric Society, vol. 66(2), pages 644-655, June.
    13. Govaert, Gérard & Nadif, Mohamed, 2008. "Block clustering with Bernoulli mixture models: Comparison of different approaches," Computational Statistics & Data Analysis, Elsevier, vol. 52(6), pages 3233-3245, February.
    14. David J. Spiegelhalter & Nicola G. Best & Bradley P. Carlin & Angelika Linde, 2014. "The deviance information criterion: 12 years on," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 76(3), pages 485-493, June.
    15. Frydman, Halina, 2005. "Estimation in the Mixture of Markov Chains Moving With Different Speeds," Journal of the American Statistical Association, American Statistical Association, vol. 100, pages 1046-1053, September.
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