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Transcriptome analysis of table grapes (Vitis vinifera L.) identified a gene network module associated with berry firmness

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  • Li Ma
  • Lingjun Sun
  • Yinshan Guo
  • Hong Lin
  • Zhendong Liu
  • Kun Li
  • Xiuwu Guo

Abstract

Berry firmness is one of the main selection criteria for table grape breeding. However, the underlying genetic determinants and mechanisms involved in gene expression during berry development are still poorly understood. In this study, eighteen libraries sampled from Vitis vinifera L. cv. ‘Red Globe’ and ‘Muscat Hamburg’ at three developmental stages (preveraison, veraison and maturation) were analyzed by RNA sequencing (RNA-Seq). The firmness of ‘Red Globe’ was significantly higher than that of ‘Muscat Hamburg’ at the three developmental stages. In total, a set of 4,559 differentially expressed genes (DEGs) was identified between ‘Red Globe’ and ‘Muscat Hamburg’ in the preveraison (2,259), veraison (2030) and maturation stages (2682), including 302 transcription factors (TFs). Weighted gene coexpression network analysis (WGCNA) showed that 23 TFs were predicted to be highly correlated with fruit firmness and propectin content. In addition, the differential expression of the PE, PL, PG, β-GAL, GATL, WAK, XTH and EXP genes might be the reason for the differences in firmness between ‘Red Globe’ and ‘Muscat Hamburg’. The results will provide new information for analysis of grape berry firmness and softening.

Suggested Citation

  • Li Ma & Lingjun Sun & Yinshan Guo & Hong Lin & Zhendong Liu & Kun Li & Xiuwu Guo, 2020. "Transcriptome analysis of table grapes (Vitis vinifera L.) identified a gene network module associated with berry firmness," PLOS ONE, Public Library of Science, vol. 15(8), pages 1-15, August.
    • Handle: RePEc:plo:pone00:0237526
    DOI: 10.1371/journal.pone.0237526
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    References listed on IDEAS

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    1. Daniel J. Cosgrove, 2000. "Loosening of plant cell walls by expansins," Nature, Nature, vol. 407(6802), pages 321-326, September.
    2. Diego Lijavetzky & Pablo Carbonell-Bejerano & Jérôme Grimplet & Gema Bravo & Pilar Flores & José Fenoll & Pilar Hellín & Juan Carlos Oliveros & José M Martínez-Zapater, 2012. "Berry Flesh and Skin Ripening Features in Vitis vinifera as Assessed by Transcriptional Profiling," PLOS ONE, Public Library of Science, vol. 7(6), pages 1-15, June.
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