IDEAS home Printed from https://ideas.repec.org/a/plo/pone00/0237526.html
   My bibliography  Save this article

Transcriptome analysis of table grapes (Vitis vinifera L.) identified a gene network module associated with berry firmness

Author

Listed:
  • Li Ma
  • Lingjun Sun
  • Yinshan Guo
  • Hong Lin
  • Zhendong Liu
  • Kun Li
  • Xiuwu Guo

Abstract

Berry firmness is one of the main selection criteria for table grape breeding. However, the underlying genetic determinants and mechanisms involved in gene expression during berry development are still poorly understood. In this study, eighteen libraries sampled from Vitis vinifera L. cv. ‘Red Globe’ and ‘Muscat Hamburg’ at three developmental stages (preveraison, veraison and maturation) were analyzed by RNA sequencing (RNA-Seq). The firmness of ‘Red Globe’ was significantly higher than that of ‘Muscat Hamburg’ at the three developmental stages. In total, a set of 4,559 differentially expressed genes (DEGs) was identified between ‘Red Globe’ and ‘Muscat Hamburg’ in the preveraison (2,259), veraison (2030) and maturation stages (2682), including 302 transcription factors (TFs). Weighted gene coexpression network analysis (WGCNA) showed that 23 TFs were predicted to be highly correlated with fruit firmness and propectin content. In addition, the differential expression of the PE, PL, PG, β-GAL, GATL, WAK, XTH and EXP genes might be the reason for the differences in firmness between ‘Red Globe’ and ‘Muscat Hamburg’. The results will provide new information for analysis of grape berry firmness and softening.

Suggested Citation

  • Li Ma & Lingjun Sun & Yinshan Guo & Hong Lin & Zhendong Liu & Kun Li & Xiuwu Guo, 2020. "Transcriptome analysis of table grapes (Vitis vinifera L.) identified a gene network module associated with berry firmness," PLOS ONE, Public Library of Science, vol. 15(8), pages 1-15, August.
  • Handle: RePEc:plo:pone00:0237526
    DOI: 10.1371/journal.pone.0237526
    as

    Download full text from publisher

    File URL: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0237526
    Download Restriction: no

    File URL: https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0237526&type=printable
    Download Restriction: no

    File URL: https://libkey.io/10.1371/journal.pone.0237526?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Diego Lijavetzky & Pablo Carbonell-Bejerano & Jérôme Grimplet & Gema Bravo & Pilar Flores & José Fenoll & Pilar Hellín & Juan Carlos Oliveros & José M Martínez-Zapater, 2012. "Berry Flesh and Skin Ripening Features in Vitis vinifera as Assessed by Transcriptional Profiling," PLOS ONE, Public Library of Science, vol. 7(6), pages 1-15, June.
    2. Daniel J. Cosgrove, 2000. "Loosening of plant cell walls by expansins," Nature, Nature, vol. 407(6802), pages 321-326, September.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Meral Yilmaz & Ömür Baysal & Ragip Soner Sīlme, 2021. "The effect of a seed coating with Origanum vulgare essential oil on Clavibacter michiganensis subsp. michiganensis," Plant Protection Science, Czech Academy of Agricultural Sciences, vol. 57(3), pages 217-225.
    2. Xing Guo & Fang Wang & Dongming Fang & Qiongqiong Lin & Sunil Kumar Sahu & Liuming Luo & Jiani Li & Yewen Chen & Shanshan Dong & Sisi Chen & Yang Liu & Shixiao Luo & Yalong Guo & Huan Liu, 2023. "The genome of Acorus deciphers insights into early monocot evolution," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    3. Heqiang Lou & Lili Song & Xiaolong Li & Hailing Zi & Weijie Chen & Yadi Gao & Shan Zheng & Zhangjun Fei & Xuepeng Sun & Jiasheng Wu, 2023. "The Torreya grandis genome illuminates the origin and evolution of gymnosperm-specific sciadonic acid biosynthesis," Nature Communications, Nature, vol. 14(1), pages 1-15, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pone00:0237526. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: plosone (email available below). General contact details of provider: https://journals.plos.org/plosone/ .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.