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Decision Tree Algorithms Predict the Diagnosis and Outcome of Dengue Fever in the Early Phase of Illness

Author

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  • Lukas Tanner
  • Mark Schreiber
  • Jenny G H Low
  • Adrian Ong
  • Thomas Tolfvenstam
  • Yee Ling Lai
  • Lee Ching Ng
  • Yee Sin Leo
  • Le Thi Puong
  • Subhash G Vasudevan
  • Cameron P Simmons
  • Martin L Hibberd
  • Eng Eong Ooi

Abstract

Background: Dengue is re-emerging throughout the tropical world, causing frequent recurrent epidemics. The initial clinical manifestation of dengue often is confused with other febrile states confounding both clinical management and disease surveillance. Evidence-based triage strategies that identify individuals likely to be in the early stages of dengue illness can direct patient stratification for clinical investigations, management, and virological surveillance. Here we report the identification of algorithms that differentiate dengue from other febrile illnesses in the primary care setting and predict severe disease in adults. Methods and Findings: A total of 1,200 patients presenting in the first 72 hours of acute febrile illness were recruited and followed up for up to a 4-week period prospectively; 1,012 of these were recruited from Singapore and 188 from Vietnam. Of these, 364 were dengue RT-PCR positive; 173 had dengue fever, 171 had dengue hemorrhagic fever, and 20 had dengue shock syndrome as final diagnosis. Using a C4.5 decision tree classifier for analysis of all clinical, haematological, and virological data, we obtained a diagnostic algorithm that differentiates dengue from non-dengue febrile illness with an accuracy of 84.7%. The algorithm can be used differently in different disease prevalence to yield clinically useful positive and negative predictive values. Furthermore, an algorithm using platelet count, crossover threshold value of a real-time RT-PCR for dengue viral RNA, and presence of pre-existing anti-dengue IgG antibodies in sequential order identified cases with sensitivity and specificity of 78.2% and 80.2%, respectively, that eventually developed thrombocytopenia of 50,000 platelet/mm3 or less, a level previously shown to be associated with haemorrhage and shock in adults with dengue fever. Conclusion: This study shows a proof-of-concept that decision algorithms using simple clinical and haematological parameters can predict diagnosis and prognosis of dengue disease, a finding that could prove useful in disease management and surveillance. Author Summary: Dengue illness appears similar to other febrile illness, particularly in the early stages of disease. Consequently, diagnosis is often delayed or confused with other illnesses, reducing the effectiveness of using clinical diagnosis for patient care and disease surveillance. To address this shortcoming, we have studied 1,200 patients who presented within 72 hours from onset of fever; 30.3% of these had dengue infection, while the remaining 69.7% had other causes of fever. Using body temperature and the results of simple laboratory tests on blood samples of these patients, we have constructed a decision algorithm that is able to distinguish patients with dengue illness from those with other causes of fever with an accuracy of 84.7%. Another decision algorithm is able to predict which of the dengue patients would go on to develop severe disease, as indicated by an eventual drop in the platelet count to 50,000/mm3 blood or below. Our study shows a proof-of-concept that simple decision algorithms can predict dengue diagnosis and the likelihood of developing severe disease, a finding that could prove useful in the management of dengue patients and to public health efforts in preventing virus transmission.

Suggested Citation

  • Lukas Tanner & Mark Schreiber & Jenny G H Low & Adrian Ong & Thomas Tolfvenstam & Yee Ling Lai & Lee Ching Ng & Yee Sin Leo & Le Thi Puong & Subhash G Vasudevan & Cameron P Simmons & Martin L Hibberd , 2008. "Decision Tree Algorithms Predict the Diagnosis and Outcome of Dengue Fever in the Early Phase of Illness," PLOS Neglected Tropical Diseases, Public Library of Science, vol. 2(3), pages 1-9, March.
  • Handle: RePEc:plo:pntd00:0000196
    DOI: 10.1371/journal.pntd.0000196
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    Citations

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    Cited by:

    1. Davide Barbieri & Nitesh Chawla & Luciana Zaccagni & Tonći Grgurinović & Jelena Šarac & Miran Čoklo & Saša Missoni, 2020. "Predicting Cardiovascular Risk in Athletes: Resampling Improves Classification Performance," IJERPH, MDPI, vol. 17(21), pages 1-9, October.
    2. Phung Khanh Lam & Tran Van Ngoc & Truong Thi Thu Thuy & Nguyen Thi Hong Van & Tran Thi Nhu Thuy & Dong Thi Hoai Tam & Nguyen Minh Dung & Nguyen Thi Hanh Tien & Nguyen Tan Thanh Kieu & Cameron Simmons , 2017. "The value of daily platelet counts for predicting dengue shock syndrome: Results from a prospective observational study of 2301 Vietnamese children with dengue," PLOS Neglected Tropical Diseases, Public Library of Science, vol. 11(4), pages 1-20, April.
    3. Tzong-Shiann Ho & Ting-Chia Weng & Jung-Der Wang & Hsieh-Cheng Han & Hao-Chien Cheng & Chun-Chieh Yang & Chih-Hen Yu & Yen-Jung Liu & Chien Hsiang Hu & Chun-Yu Huang & Ming-Hong Chen & Chwan-Chuen Kin, 2020. "Comparing machine learning with case-control models to identify confirmed dengue cases," PLOS Neglected Tropical Diseases, Public Library of Science, vol. 14(11), pages 1-21, November.
    4. Sangshin Park & Anon Srikiatkhachorn & Siripen Kalayanarooj & Louis Macareo & Sharone Green & Jennifer F Friedman & Alan L Rothman, 2018. "Use of structural equation models to predict dengue illness phenotype," PLOS Neglected Tropical Diseases, Public Library of Science, vol. 12(10), pages 1-14, October.
    5. Yanchao Liu, 2022. "bsnsing: A Decision Tree Induction Method Based on Recursive Optimal Boolean Rule Composition," INFORMS Journal on Computing, INFORMS, vol. 34(6), pages 2908-2929, November.

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