Fast Reconstruction of Compact Context-Specific Metabolic Network Models
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DOI: 10.1371/journal.pcbi.1003424
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Cited by:
- Oveis Jamialahmadi & Sameereh Hashemi-Najafabadi & Ehsan Motamedian & Stefano Romeo & Fatemeh Bagheri, 2019. "A benchmark-driven approach to reconstruct metabolic networks for studying cancer metabolism," PLOS Computational Biology, Public Library of Science, vol. 15(4), pages 1-29, April.
- Yuefan Huang & Vakul Mohanty & Merve Dede & Kyle Tsai & May Daher & Li Li & Katayoun Rezvani & Ken Chen, 2023. "Characterizing cancer metabolism from bulk and single-cell RNA-seq data using METAFlux," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
- Zhepu Ruan & Kai Chen & Weimiao Cao & Lei Meng & Bingang Yang & Mengjun Xu & Youwen Xing & Pengfa Li & Shiri Freilich & Chen Chen & Yanzheng Gao & Jiandong Jiang & Xihui Xu, 2024. "Engineering natural microbiomes toward enhanced bioremediation by microbiome modeling," Nature Communications, Nature, vol. 15(1), pages 1-19, December.
- Mohammad H. Mirhakkak & Xiuqiang Chen & Yueqiong Ni & Thorsten Heinekamp & Tongta Sae-Ong & Lin-Lin Xu & Oliver Kurzai & Amelia E. Barber & Axel A. Brakhage & Sebastien Boutin & Sascha Schäuble & Gian, 2023. "Genome-scale metabolic modeling of Aspergillus fumigatus strains reveals growth dependencies on the lung microbiome," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
- André Schultz & Amina A Qutub, 2016. "Reconstruction of Tissue-Specific Metabolic Networks Using CORDA," PLOS Computational Biology, Public Library of Science, vol. 12(3), pages 1-33, March.
- Hulda S Haraldsdóttir & Ronan M T Fleming, 2016. "Identification of Conserved Moieties in Metabolic Networks by Graph Theoretical Analysis of Atom Transition Networks," PLOS Computational Biology, Public Library of Science, vol. 12(11), pages 1-30, November.
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