The Construction and Use of Log-Odds Substitution Scores for Multiple Sequence Alignment
Author
Abstract
Suggested Citation
DOI: 10.1371/journal.pcbi.1000852
Download full text from publisher
References listed on IDEAS
- Duncan P Brown & Nandini Krishnamurthy & Kimmen Sjölander, 2007. "Automated Protein Subfamily Identification and Classification," PLOS Computational Biology, Public Library of Science, vol. 3(8), pages 1-13, August.
- Robert K Bradley & Adam Roberts & Michael Smoot & Sudeep Juvekar & Jaeyoung Do & Colin Dewey & Ian Holmes & Lior Pachter, 2009. "Fast Statistical Alignment," PLOS Computational Biology, Public Library of Science, vol. 5(5), pages 1-15, May.
Citations
Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
Cited by:
- Andrew F Neuwald & Stephen F Altschul, 2016. "Inference of Functionally-Relevant N-acetyltransferase Residues Based on Statistical Correlations," PLOS Computational Biology, Public Library of Science, vol. 12(12), pages 1-30, December.
- Alejandro Ochoa & John D Storey & Manuel Llinás & Mona Singh, 2015. "Beyond the E-Value: Stratified Statistics for Protein Domain Prediction," PLOS Computational Biology, Public Library of Science, vol. 11(11), pages 1-21, November.
- Andrew F Neuwald & Stephen F Altschul, 2016. "Bayesian Top-Down Protein Sequence Alignment with Inferred Position-Specific Gap Penalties," PLOS Computational Biology, Public Library of Science, vol. 12(5), pages 1-21, May.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Yi-An Chen & Lokesh P Tripathi & Benoit H Dessailly & Johan Nyström-Persson & Shandar Ahmad & Kenji Mizuguchi, 2014. "Integrated Pathway Clusters with Coherent Biological Themes for Target Prioritisation," PLOS ONE, Public Library of Science, vol. 9(6), pages 1-11, June.
- Elisa Boari de Lima & Wagner Meira Júnior & Raquel Cardoso de Melo-Minardi, 2016. "Isofunctional Protein Subfamily Detection Using Data Integration and Spectral Clustering," PLOS Computational Biology, Public Library of Science, vol. 12(6), pages 1-32, June.
- Erick Moreno-Centeno & Richard M. Karp, 2013. "The Implicit Hitting Set Approach to Solve Combinatorial Optimization Problems with an Application to Multigenome Alignment," Operations Research, INFORMS, vol. 61(2), pages 453-468, April.
- Michiaki Hamada & Hisanori Kiryu & Wataru Iwasaki & Kiyoshi Asai, 2011. "Generalized Centroid Estimators in Bioinformatics," PLOS ONE, Public Library of Science, vol. 6(2), pages 1-20, February.
- Lewis Stevens & Isaac Martínez-Ugalde & Erna King & Martin Wagah & Dominic Absolon & Rowan Bancroft & Pablo Gonzalez de la Rosa & Jessica L. Hall & Manuela Kieninger & Agnieszka Kloch & Sarah Pelan & , 2023. "Ancient diversity in host-parasite interaction genes in a model parasitic nematode," Nature Communications, Nature, vol. 14(1), pages 1-19, December.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pcbi00:1000852. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: ploscompbiol (email available below). General contact details of provider: https://journals.plos.org/ploscompbiol/ .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.