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Data-driven analyses of motor impairments in animal models of neurological disorders

Author

Listed:
  • Hardeep Ryait
  • Edgar Bermudez-Contreras
  • Matthew Harvey
  • Jamshid Faraji
  • Behroo Mirza Agha
  • Andrea Gomez-Palacio Schjetnan
  • Aaron Gruber
  • Jon Doan
  • Majid Mohajerani
  • Gerlinde A S Metz
  • Ian Q Whishaw
  • Artur Luczak

Abstract

Behavior provides important insights into neuronal processes. For example, analysis of reaching movements can give a reliable indication of the degree of impairment in neurological disorders such as stroke, Parkinson disease, or Huntington disease. The analysis of such movement abnormalities is notoriously difficult and requires a trained evaluator. Here, we show that a deep neural network is able to score behavioral impairments with expert accuracy in rodent models of stroke. The same network was also trained to successfully score movements in a variety of other behavioral tasks. The neural network also uncovered novel movement alterations related to stroke, which had higher predictive power of stroke volume than the movement components defined by human experts. Moreover, when the regression network was trained only on categorical information (control = 0; stroke = 1), it generated predictions with intermediate values between 0 and 1 that matched the human expert scores of stroke severity. The network thus offers a new data-driven approach to automatically derive ratings of motor impairments. Altogether, this network can provide a reliable neurological assessment and can assist the design of behavioral indices to diagnose and monitor neurological disorders.This study demonstrates that a state-of-the-art neural network can provide automated scoring of motor deficits with an accuracy equivalent to that of human experts and has the potential teach us to develop more-sensitive behavioral tests.

Suggested Citation

  • Hardeep Ryait & Edgar Bermudez-Contreras & Matthew Harvey & Jamshid Faraji & Behroo Mirza Agha & Andrea Gomez-Palacio Schjetnan & Aaron Gruber & Jon Doan & Majid Mohajerani & Gerlinde A S Metz & Ian Q, 2019. "Data-driven analyses of motor impairments in animal models of neurological disorders," PLOS Biology, Public Library of Science, vol. 17(11), pages 1-30, November.
  • Handle: RePEc:plo:pbio00:3000516
    DOI: 10.1371/journal.pbio.3000516
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    References listed on IDEAS

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    1. Jessica L. Nielson & Jesse Paquette & Aiwen W. Liu & Cristian F. Guandique & C. Amy Tovar & Tomoo Inoue & Karen-Amanda Irvine & John C. Gensel & Jennifer Kloke & Tanya C. Petrossian & Pek Y. Lum & Gun, 2015. "Topological data analysis for discovery in preclinical spinal cord injury and traumatic brain injury," Nature Communications, Nature, vol. 6(1), pages 1-12, December.
    2. Hueihan Jhuang & Estibaliz Garrote & Xinlin Yu & Vinita Khilnani & Tomaso Poggio & Andrew D. Steele & Thomas Serre, 2010. "Automated home-cage behavioural phenotyping of mice," Nature Communications, Nature, vol. 1(1), pages 1-10, December.
    3. Jumpei Matsumoto & Susumu Urakawa & Yusaku Takamura & Renato Malcher-Lopes & Etsuro Hori & Carlos Tomaz & Taketoshi Ono & Hisao Nishijo, 2013. "A 3D-Video-Based Computerized Analysis of Social and Sexual Interactions in Rats," PLOS ONE, Public Library of Science, vol. 8(10), pages 1-14, October.
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