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Chimeric peptidomimetic antibiotics against Gram-negative bacteria

Author

Listed:
  • Anatol Luther

    (Polyphor AG)

  • Matthias Urfer

    (University of Zurich)

  • Michael Zahn

    (University of Basel)

  • Maik Müller

    (ETH Zurich)

  • Shuang-Yan Wang

    (University of Zurich)

  • Milon Mondal

    (University of Zurich)

  • Alessandra Vitale

    (University of Zurich)

  • Jean-Baptiste Hartmann

    (University of Basel)

  • Timothy Sharpe

    (University of Basel)

  • Fabio Lo Monte

    (University of Zurich)

  • Harsha Kocherla

    (University of Zurich)

  • Elizabeth Cline

    (University of Zurich)

  • Gabriella Pessi

    (University of Zurich)

  • Parthasarathi Rath

    (University of Basel)

  • Seyed Majed Modaresi

    (University of Basel)

  • Petra Chiquet

    (Polyphor AG)

  • Sarah Stiegeler

    (Polyphor AG)

  • Carolin Verbree

    (Polyphor AG)

  • Tobias Remus

    (Polyphor AG)

  • Michel Schmitt

    (Polyphor AG)

  • Caroline Kolopp

    (Polyphor AG)

  • Marie-Anne Westwood

    (Polyphor AG)

  • Nicolas Desjonquères

    (Polyphor AG)

  • Emile Brabet

    (Polyphor AG)

  • Sophie Hell

    (Polyphor AG)

  • Karen LePoupon

    (Polyphor AG)

  • Annie Vermeulen

    (Polyphor AG)

  • Régis Jaisson

    (Polyphor AG)

  • Virginie Rithié

    (Polyphor AG)

  • Grégory Upert

    (Polyphor AG)

  • Alexander Lederer

    (Polyphor AG)

  • Peter Zbinden

    (Polyphor AG)

  • Achim Wach

    (Polyphor AG)

  • Kerstin Moehle

    (University of Zurich)

  • Katja Zerbe

    (University of Zurich)

  • Hans H. Locher

    (Polyphor AG)

  • Francesca Bernardini

    (Polyphor AG)

  • Glenn E. Dale

    (Polyphor AG)

  • Leo Eberl

    (University of Zurich)

  • Bernd Wollscheid

    (ETH Zurich)

  • Sebastian Hiller

    (University of Basel)

  • John A. Robinson

    (University of Zurich)

  • Daniel Obrecht

    (Polyphor AG)

Abstract

There is an urgent need for new antibiotics against Gram-negative pathogens that are resistant to carbapenem and third-generation cephalosporins, against which antibiotics of last resort have lost most of their efficacy. Here we describe a class of synthetic antibiotics inspired by scaffolds derived from natural products. These chimeric antibiotics contain a β-hairpin peptide macrocycle linked to the macrocycle found in the polymyxin and colistin family of natural products. They are bactericidal and have a mechanism of action that involves binding to both lipopolysaccharide and the main component (BamA) of the β-barrel folding complex (BAM) that is required for the folding and insertion of β-barrel proteins into the outer membrane of Gram-negative bacteria. Extensively optimized derivatives show potent activity against multidrug-resistant pathogens, including all of the Gram-negative members of the ESKAPE pathogens1. These derivatives also show favourable drug properties and overcome colistin resistance, both in vitro and in vivo. The lead candidate is currently in preclinical toxicology studies that—if successful—will allow progress into clinical studies that have the potential to address life-threatening infections by the Gram-negative pathogens, and thus to resolve a considerable unmet medical need.

Suggested Citation

  • Anatol Luther & Matthias Urfer & Michael Zahn & Maik Müller & Shuang-Yan Wang & Milon Mondal & Alessandra Vitale & Jean-Baptiste Hartmann & Timothy Sharpe & Fabio Lo Monte & Harsha Kocherla & Elizabet, 2019. "Chimeric peptidomimetic antibiotics against Gram-negative bacteria," Nature, Nature, vol. 576(7787), pages 452-458, December.
  • Handle: RePEc:nat:nature:v:576:y:2019:i:7787:d:10.1038_s41586-019-1665-6
    DOI: 10.1038/s41586-019-1665-6
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    Citations

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    Cited by:

    1. Runrun Wu & Jeremy W. Bakelar & Karl Lundquist & Zijian Zhang & Katie M. Kuo & David Ryoo & Yui Tik Pang & Chen Sun & Tommi White & Thomas Klose & Wen Jiang & James C. Gumbart & Nicholas Noinaj, 2021. "Plasticity within the barrel domain of BamA mediates a hybrid-barrel mechanism by BAM," Nature Communications, Nature, vol. 12(1), pages 1-16, December.
    2. Dawei Sun & Kelly M. Storek & Dimitry Tegunov & Ying Yang & Christopher P. Arthur & Matthew Johnson & John G. Quinn & Weijing Liu & Guanghui Han & Hany S. Girgis & Mary Kate Alexander & Austin K. Murc, 2024. "The discovery and structural basis of two distinct state-dependent inhibitors of BamA," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    3. Christopher Jonkergouw & Ngong Kodiah Beyeh & Ekaterina Osmekhina & Katarzyna Leskinen & S. Maryamdokht Taimoory & Dmitrii Fedorov & Eduardo Anaya-Plaza & Mauri A. Kostiainen & John F. Trant & Robin H, 2023. "Repurposing host-guest chemistry to sequester virulence and eradicate biofilms in multidrug resistant Pseudomonas aeruginosa and Acinetobacter baumannii," Nature Communications, Nature, vol. 14(1), pages 1-18, December.
    4. Christopher J. Barden & Fan Wu & J. Pedro Fernandez-Murray & Erhu Lu & Shengguo Sun & Marcia M. Taylor & Annette L. Rushton & Jason Williams & Mahtab Tavasoli & Autumn Meek & Alla Siva Reddy & Lisa M., 2024. "Computer-aided drug design to generate a unique antibiotic family," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
    5. Parthasarathi Rath & Adrian Hermann & Ramona Schaefer & Elia Agustoni & Jean-Marie Vonach & Martin Siegrist & Christian Miscenic & Andreas Tschumi & Doris Roth & Christoph Bieniossek & Sebastian Hille, 2023. "High-throughput screening of BAM inhibitors in native membrane environment," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    6. Mathieu Botte & Dongchun Ni & Stephan Schenck & Iwan Zimmermann & Mohamed Chami & Nicolas Bocquet & Pascal Egloff & Denis Bucher & Matilde Trabuco & Robert K. Y. Cheng & Janine D. Brunner & Markus A. , 2022. "Cryo-EM structures of a LptDE transporter in complex with Pro-macrobodies offer insight into lipopolysaccharide translocation," Nature Communications, Nature, vol. 13(1), pages 1-10, December.

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