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Neoantigen vaccine generates intratumoral T cell responses in phase Ib glioblastoma trial

Author

Listed:
  • Derin B. Keskin

    (Dana-Farber Cancer Institute
    Brigham and Women’s Hospital
    Broad Institute of MIT and Harvard
    Harvard Medical School)

  • Annabelle J. Anandappa

    (Dana-Farber Cancer Institute
    Harvard Medical School)

  • Jing Sun

    (Dana-Farber Cancer Institute)

  • Itay Tirosh

    (Broad Institute of MIT and Harvard
    Weizmann Institute of Science)

  • Nathan D. Mathewson

    (Harvard Medical School
    Dana-Farber Cancer Institute)

  • Shuqiang Li

    (Broad Institute of MIT and Harvard
    Dana-Farber Cancer Institute)

  • Giacomo Oliveira

    (Dana-Farber Cancer Institute)

  • Anita Giobbie-Hurder

    (Dana-Farber Cancer Institute)

  • Kristen Felt

    (Center for Immuno-Oncology, Dana-Farber Cancer Institute)

  • Evisa Gjini

    (Center for Immuno-Oncology, Dana-Farber Cancer Institute)

  • Sachet A. Shukla

    (Dana-Farber Cancer Institute
    Dana-Farber Cancer Institute)

  • Zhuting Hu

    (Dana-Farber Cancer Institute)

  • Letitia Li

    (Dana-Farber Cancer Institute)

  • Phuong M. Le

    (Dana-Farber Cancer Institute)

  • Rosa L. Allesøe

    (Dana-Farber Cancer Institute
    Technical University of Denmark)

  • Alyssa R. Richman

    (Broad Institute of MIT and Harvard
    Harvard Medical School
    Massachusetts General Hospital
    Massachusetts General Hospital)

  • Monika S. Kowalczyk

    (Broad Institute of MIT and Harvard)

  • Sara Abdelrahman

    (Center for Immuno-Oncology, Dana-Farber Cancer Institute)

  • Jack E. Geduldig

    (Dana-Farber Cancer Institute)

  • Sarah Charbonneau

    (Dana-Farber Cancer Institute)

  • Kristine Pelton

    (Dana-Farber Cancer Institute)

  • J. Bryan Iorgulescu

    (Dana-Farber Cancer Institute
    Harvard Medical School
    Brigham and Women’s Hospital)

  • Liudmila Elagina

    (Broad Institute of MIT and Harvard)

  • Wandi Zhang

    (Dana-Farber Cancer Institute)

  • Oriol Olive

    (Dana-Farber Cancer Institute)

  • Christine McCluskey

    (Dana-Farber Cancer Institute)

  • Lars R. Olsen

    (Technical University of Denmark)

  • Jonathan Stevens

    (Brigham and Women’s Hospital)

  • William J. Lane

    (Harvard Medical School
    Brigham and Women’s Hospital)

  • Andres M. Salazar

    (Oncovir Inc)

  • Heather Daley

    (Dana-Farber Cancer Institute)

  • Patrick Y. Wen

    (Dana-Farber Cancer Institute
    Harvard Medical School
    Brigham and Women’s Hospital)

  • E. Antonio Chiocca

    (Harvard Medical School
    Brigham and Women’s Hospital)

  • Maegan Harden

    (Broad Institute of MIT and Harvard)

  • Niall J. Lennon

    (Broad Institute of MIT and Harvard)

  • Stacey Gabriel

    (Broad Institute of MIT and Harvard)

  • Gad Getz

    (Broad Institute of MIT and Harvard
    Harvard Medical School
    Massachusetts General Hospital)

  • Eric S. Lander

    (Broad Institute of MIT and Harvard)

  • Aviv Regev

    (Broad Institute of MIT and Harvard)

  • Jerome Ritz

    (Dana-Farber Cancer Institute
    Brigham and Women’s Hospital
    Harvard Medical School)

  • Donna Neuberg

    (Dana-Farber Cancer Institute)

  • Scott J. Rodig

    (Harvard Medical School
    Center for Immuno-Oncology, Dana-Farber Cancer Institute
    Brigham and Women’s Hospital)

  • Keith L. Ligon

    (Broad Institute of MIT and Harvard
    Harvard Medical School
    Dana-Farber Cancer Institute
    Brigham and Women’s Hospital)

  • Mario L. Suvà

    (Broad Institute of MIT and Harvard
    Harvard Medical School
    Massachusetts General Hospital
    Massachusetts General Hospital)

  • Kai W. Wucherpfennig

    (Harvard Medical School
    Dana-Farber Cancer Institute)

  • Nir Hacohen

    (Broad Institute of MIT and Harvard
    Harvard Medical School
    Massachusetts General Hospital)

  • Edward F. Fritsch

    (Dana-Farber Cancer Institute
    Broad Institute of MIT and Harvard
    Neon Therapeutics Inc)

  • Kenneth J. Livak

    (Dana-Farber Cancer Institute
    Dana-Farber Cancer Institute)

  • Patrick A. Ott

    (Dana-Farber Cancer Institute
    Brigham and Women’s Hospital
    Harvard Medical School)

  • Catherine J. Wu

    (Dana-Farber Cancer Institute
    Brigham and Women’s Hospital
    Broad Institute of MIT and Harvard
    Harvard Medical School)

  • David A. Reardon

    (Dana-Farber Cancer Institute
    Brigham and Women’s Hospital
    Harvard Medical School)

Abstract

Neoantigens, which are derived from tumour-specific protein-coding mutations, are exempt from central tolerance, can generate robust immune responses1,2 and can function as bona fide antigens that facilitate tumour rejection3. Here we demonstrate that a strategy that uses multi-epitope, personalized neoantigen vaccination, which has previously been tested in patients with high-risk melanoma4–6, is feasible for tumours such as glioblastoma, which typically have a relatively low mutation load1,7 and an immunologically ‘cold’ tumour microenvironment8. We used personalized neoantigen-targeting vaccines to immunize patients newly diagnosed with glioblastoma following surgical resection and conventional radiotherapy in a phase I/Ib study. Patients who did not receive dexamethasone—a highly potent corticosteroid that is frequently prescribed to treat cerebral oedema in patients with glioblastoma—generated circulating polyfunctional neoantigen-specific CD4+ and CD8+ T cell responses that were enriched in a memory phenotype and showed an increase in the number of tumour-infiltrating T cells. Using single-cell T cell receptor analysis, we provide evidence that neoantigen-specific T cells from the peripheral blood can migrate into an intracranial glioblastoma tumour. Neoantigen-targeting vaccines thus have the potential to favourably alter the immune milieu of glioblastoma.

Suggested Citation

  • Derin B. Keskin & Annabelle J. Anandappa & Jing Sun & Itay Tirosh & Nathan D. Mathewson & Shuqiang Li & Giacomo Oliveira & Anita Giobbie-Hurder & Kristen Felt & Evisa Gjini & Sachet A. Shukla & Zhutin, 2019. "Neoantigen vaccine generates intratumoral T cell responses in phase Ib glioblastoma trial," Nature, Nature, vol. 565(7738), pages 234-239, January.
  • Handle: RePEc:nat:nature:v:565:y:2019:i:7738:d:10.1038_s41586-018-0792-9
    DOI: 10.1038/s41586-018-0792-9
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    Cited by:

    1. Hakimeh Ebrahimi-Nik & Marmar Moussa & Ryan P. Englander & Summit Singhaviranon & Justine Michaux & HuiSong Pak & Hiroko Miyadera & William L. Corwin & Grant L. J. Keller & Adam T. Hagymasi & Tatiana , 2021. "Reversion analysis reveals the in vivo immunogenicity of a poorly MHC I-binding cancer neoepitope," Nature Communications, Nature, vol. 12(1), pages 1-11, December.
    2. Dinh-Huy Nguyen & Sung-Hwan You & Hien Thi-Thu Ngo & Khuynh Nguyen & Khang Vuong Tran & Tan-Huy Chu & So-young Kim & Sang-Jun Ha & Yeongjin Hong & Jung-Joon Min, 2024. "Reprogramming the tumor immune microenvironment using engineered dual-drug loaded Salmonella," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
    3. J. K. Wiencke & Annette M. Molinaro & Gayathri Warrier & Terri Rice & Jennifer Clarke & Jennie W. Taylor & Margaret Wrensch & Helen Hansen & Lucie McCoy & Emily Tang & Stan J. Tamaki & Courtney M. Tam, 2022. "DNA methylation as a pharmacodynamic marker of glucocorticoid response and glioma survival," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    4. Laura Y. Zhou & Fei Zou & Wei Sun, 2023. "Prioritizing candidate peptides for cancer vaccines through predicting peptide presentation by HLA‐I proteins," Biometrics, The International Biometric Society, vol. 79(3), pages 2664-2676, September.
    5. Pauline Latzer & Henning Zelba & Florian Battke & Annekathrin Reinhardt & Borong Shao & Oliver Bartsch & Armin Rabsteyn & Johannes Harter & Martin Schulze & Thomas Okech & Alexander Golf & Christina K, 2024. "A real-world observation of patients with glioblastoma treated with a personalized peptide vaccine," Nature Communications, Nature, vol. 15(1), pages 1-9, December.

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