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DNA rendering of polyhedral meshes at the nanoscale

Author

Listed:
  • Erik Benson

    (Karolinska Institutet
    Karolinska Institutet)

  • Abdulmelik Mohammed

    (Aalto University)

  • Johan Gardell

    (Karolinska Institutet
    Karolinska Institutet)

  • Sergej Masich

    (Karolinska Institutet)

  • Eugen Czeizler

    (Aalto University)

  • Pekka Orponen

    (Aalto University)

  • Björn Högberg

    (Karolinska Institutet
    Karolinska Institutet)

Abstract

A general method of folding arbitrary polygonal digital meshes in DNA uses a routeing algorithm based on graph theory and a relaxation simulation that traces scaffold strands through the target structures to produce complex structures with an open conformation that are stable under biological assay conditions.

Suggested Citation

  • Erik Benson & Abdulmelik Mohammed & Johan Gardell & Sergej Masich & Eugen Czeizler & Pekka Orponen & Björn Högberg, 2015. "DNA rendering of polyhedral meshes at the nanoscale," Nature, Nature, vol. 523(7561), pages 441-444, July.
    • Handle: RePEc:nat:nature:v:523:y:2015:i:7561:d:10.1038_nature14586
    DOI: 10.1038/nature14586
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    Citations

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    Cited by:

    1. Molly F. Parsons & Matthew F. Allan & Shanshan Li & Tyson R. Shepherd & Sakul Ratanalert & Kaiming Zhang & Krista M. Pullen & Wah Chiu & Silvi Rouskin & Mark Bathe, 2023. "3D RNA-scaffolded wireframe origami," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
    2. Jae Young Lee & Heeyuen Koh & Do-Nyun Kim, 2023. "A computational model for structural dynamics and reconfiguration of DNA assemblies," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
    3. James Mallos, 2019. "A 6-Letter ‘DNA’ for Baskets with Handles," Mathematics, MDPI, vol. 7(2), pages 1-14, February.
    4. Sungwook Woo & Sinem K. Saka & Feng Xuan & Peng Yin, 2024. "Molecular robotic agents that survey molecular landscapes for information retrieval," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    5. Alexandru Amărioarei & Frankie Spencer & Gefry Barad & Ana-Maria Gheorghe & Corina Iţcuş & Iris Tuşa & Ana-Maria Prelipcean & Andrei Păun & Mihaela Păun & Alfonso Rodriguez-Paton & Romică Trandafir & , 2021. "DNA-Guided Assembly for Fibril Proteins," Mathematics, MDPI, vol. 9(4), pages 1-17, February.

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