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Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

Author

Listed:
  • Davide Bulgarelli

    (Max Planck Institute for Plant Breeding Research)

  • Matthias Rott

    (Max Planck Institute for Plant Breeding Research)

  • Klaus Schlaeppi

    (Max Planck Institute for Plant Breeding Research)

  • Emiel Ver Loren van Themaat

    (Max Planck Institute for Plant Breeding Research)

  • Nahal Ahmadinejad

    (Max Planck Institute for Plant Breeding Research
    Present addresses: INRES - Crop Bioinformatics, University of Bonn, 53115 Bonn, Germany (N.A.); Department of Developmental Immunology, Max Planck Institute of Immunobiology and Epigenetics, 79108 Freiburg, Germany (P.R.).)

  • Federica Assenza

    (Max Planck Institute for Plant Breeding Research)

  • Philipp Rauf

    (Max Planck Institute for Plant Breeding Research
    Present addresses: INRES - Crop Bioinformatics, University of Bonn, 53115 Bonn, Germany (N.A.); Department of Developmental Immunology, Max Planck Institute of Immunobiology and Epigenetics, 79108 Freiburg, Germany (P.R.).)

  • Bruno Huettel

    (Max Planck Genome Centre, Max Planck Institute for Plant Breeding Research)

  • Richard Reinhardt

    (Max Planck Genome Centre, Max Planck Institute for Plant Breeding Research)

  • Elmon Schmelzer

    (Central Microscopy, Max Planck Institute for Plant Breeding Research)

  • Joerg Peplies

    (Ribocon GmbH)

  • Frank Oliver Gloeckner

    (Ribocon GmbH
    Max Planck Institute for Marine Microbiology)

  • Rudolf Amann

    (Max Planck Institute for Marine Microbiology)

  • Thilo Eickhorst

    (Soil Science, Faculty of Biology and Chemistry, University of Bremen)

  • Paul Schulze-Lefert

    (Max Planck Institute for Plant Breeding Research)

Abstract

Roots of land plants are populated by a specific microbiota capable of modulating plant growth and development; here large-scale sequencing analysis shows that the bacterial community inhabiting Arabidopsis roots is influenced by soil type and plant genotype, and that plant cell-wall features serve as colonization cue for a subcommunity of the root microbiota.

Suggested Citation

  • Davide Bulgarelli & Matthias Rott & Klaus Schlaeppi & Emiel Ver Loren van Themaat & Nahal Ahmadinejad & Federica Assenza & Philipp Rauf & Bruno Huettel & Richard Reinhardt & Elmon Schmelzer & Joerg Pe, 2012. "Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota," Nature, Nature, vol. 488(7409), pages 91-95, August.
    • Handle: RePEc:nat:nature:v:488:y:2012:i:7409:d:10.1038_nature11336
    DOI: 10.1038/nature11336
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    1. Feiyun Xu & Hanpeng Liao & Jinyong Yang & Yingjiao Zhang & Peng Yu & Yiying Cao & Ju Fang & Shu Chen & Liang Li & Leyun Sun & Chongxuan Du & Ke Wang & Xiaolin Dang & Zhiwei Feng & Yifan Cao & Ying Li , 2023. "Auxin-producing bacteria promote barley rhizosheath formation," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
    2. Wenli Zhang & Yubing Liu & Zengru Wang & Lina Zhao & Jinghua Qi & Yansong Wang & Pan Zhao & Naiqin Zhong, 2020. "Short-Term Effects of Eco-Friendly Fertilizers on a Soil Bacterial Community in the Topsoil and Rhizosphere of an Irrigated Agroecosystem," Sustainability, MDPI, vol. 12(12), pages 1-16, June.
    3. Nicholas Ozede Igiehon & Olubukola Oluranti Babalola, 2018. "Rhizosphere Microbiome Modulators: Contributions of Nitrogen Fixing Bacteria towards Sustainable Agriculture," IJERPH, MDPI, vol. 15(4), pages 1-25, March.
    4. Carmen Escudero-Martinez & Max Coulter & Rodrigo Alegria Terrazas & Alexandre Foito & Rumana Kapadia & Laura Pietrangelo & Mauro Maver & Rajiv Sharma & Alessio Aprile & Jenny Morris & Pete E. Hedley &, 2022. "Identifying plant genes shaping microbiota composition in the barley rhizosphere," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
    5. Ke Tao & Ib T. Jensen & Sha Zhang & Eber Villa-Rodríguez & Zuzana Blahovska & Camilla Lind Salomonsen & Anna Martyn & Þuríður Nótt Björgvinsdóttir & Simon Kelly & Luc Janss & Marianne Glasius & Rasmus, 2024. "Nitrogen and Nod factor signaling determine Lotus japonicus root exudate composition and bacterial assembly," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    6. Adina Howe & Nejc Stopnisek & Shane K. Dooley & Fan Yang & Keara L. Grady & Ashley Shade, 2023. "Seasonal activities of the phyllosphere microbiome of perennial crops," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    7. Mingxing Wang & An-Hui Ge & Xingzhu Ma & Xiaolin Wang & Qiujin Xie & Like Wang & Xianwei Song & Mengchen Jiang & Weibing Yang & Jeremy D. Murray & Yayu Wang & Huan Liu & Xiaofeng Cao & Ertao Wang, 2024. "Dynamic root microbiome sustains soybean productivity under unbalanced fertilization," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    8. Zhaohui Cao & Wenlong Zuo & Lanxiang Wang & Junyu Chen & Zepeng Qu & Fan Jin & Lei Dai, 2023. "Spatial profiling of microbial communities by sequential FISH with error-robust encoding," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    9. Luigi Russi & Gianpiero Marconi & Nicoletta Ferradini & Beatrice Farda & Marika Pellegrini & Loretta Pace, 2022. "Investigating Population Genetic Diversity and Rhizosphere Microbiota of Central Apennines’ Artemisia eriantha," Sustainability, MDPI, vol. 14(18), pages 1-14, September.
    10. Amrita Gupta & Udai B. Singh & Pramod K. Sahu & Surinder Paul & Adarsh Kumar & Deepti Malviya & Shailendra Singh & Pandiyan Kuppusamy & Prakash Singh & Diby Paul & Jai P. Rai & Harsh V. Singh & Madhab, 2022. "Linking Soil Microbial Diversity to Modern Agriculture Practices: A Review," IJERPH, MDPI, vol. 19(5), pages 1-29, March.
    11. Hao Zhang & Zi-Wei Hua & Wen-Zhi Liang & Qiu-Hong Niu & Xiang Wang, 2020. "The Prevention of Bio-Organic Fertilizer Fermented from Cow Manure Compost by Bacillus sp. XG-1 on Watermelon Continuous Cropping Barrier," IJERPH, MDPI, vol. 17(16), pages 1-16, August.
    12. Yunpeng Liu & Huihui Zhang & Jing Wang & Wenting Gao & Xiting Sun & Qin Xiong & Xia Shu & Youzhi Miao & Qirong Shen & Weibing Xun & Ruifu Zhang, 2024. "Nonpathogenic Pseudomonas syringae derivatives and its metabolites trigger the plant “cry for help” response to assemble disease suppressing and growth promoting rhizomicrobiome," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    13. Yanfen Zheng & Xuwen Cao & Yanan Zhou & Siqi Ma & Youqiang Wang & Zhe Li & Donglin Zhao & Yanzhe Yang & Han Zhang & Chen Meng & Zhihong Xie & Xiaona Sui & Kangwen Xu & Yiqiang Li & Cheng-Sheng Zhang, 2024. "Purines enrich root-associated Pseudomonas and improve wild soybean growth under salt stress," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    14. Carla L. Abán & Giovanni Larama & Antonella Ducci & Jorgelina Huidobro & Michel Abanto & Silvina Vargas-Gil & Carolina Pérez-Brandan, 2022. "Soil Properties and Bacterial Communities Associated with the Rhizosphere of the Common Bean after Using Brachiaria brizantha as a Service Crop: A 10-Year Field Experiment," Sustainability, MDPI, vol. 15(1), pages 1-23, December.

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