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Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny

Author

Listed:
  • F. Joseph Pollock

    (Pennsylvania State University)

  • Ryan McMinds

    (Oregon State University)

  • Styles Smith

    (Pennsylvania State University)

  • David G. Bourne

    (James Cook University
    Australian Institute of Marine Science)

  • Bette L. Willis

    (James Cook University
    James Cook University)

  • Mónica Medina

    (Pennsylvania State University
    Smithsonian Tropical Research Institute, Smithsonian Institution)

  • Rebecca Vega Thurber

    (Oregon State University)

  • Jesse R. Zaneveld

    (University of Washington)

Abstract

Scleractinian corals’ microbial symbionts influence host health, yet how coral microbiomes assembled over evolution is not well understood. We survey bacterial and archaeal communities in phylogenetically diverse Australian corals representing more than 425 million years of diversification. We show that coral microbiomes are anatomically compartmentalized in both modern microbial ecology and evolutionary assembly. Coral mucus, tissue, and skeleton microbiomes differ in microbial community composition, richness, and response to host vs. environmental drivers. We also find evidence of coral-microbe phylosymbiosis, in which coral microbiome composition and richness reflect coral phylogeny. Surprisingly, the coral skeleton represents the most biodiverse coral microbiome, and also shows the strongest evidence of phylosymbiosis. Interactions between bacterial and coral phylogeny significantly influence the abundance of four groups of bacteria–including Endozoicomonas-like bacteria, which divide into host-generalist and host-specific subclades. Together these results trace microbial symbiosis across anatomy during the evolution of a basal animal lineage.

Suggested Citation

  • F. Joseph Pollock & Ryan McMinds & Styles Smith & David G. Bourne & Bette L. Willis & Mónica Medina & Rebecca Vega Thurber & Jesse R. Zaneveld, 2018. "Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny," Nature Communications, Nature, vol. 9(1), pages 1-13, December.
    • Handle: RePEc:nat:natcom:v:9:y:2018:i:1:d:10.1038_s41467-018-07275-x
    DOI: 10.1038/s41467-018-07275-x
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    Cited by:

    1. M. McCauley & T. L. Goulet & C. R. Jackson & S. Loesgen, 2023. "Systematic review of cnidarian microbiomes reveals insights into the structure, specificity, and fidelity of marine associations," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    2. Pierre E. Galand & Hans-Joachim Ruscheweyh & Guillem Salazar & Corentin Hochart & Nicolas Henry & Benjamin C. C. Hume & Pedro H. Oliveira & Aude Perdereau & Karine Labadie & Caroline Belser & Emilie B, 2023. "Diversity of the Pacific Ocean coral reef microbiome," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    3. Corentin Hochart & Lucas Paoli & Hans-Joachim Ruscheweyh & Guillem Salazar & Emilie Boissin & Sarah Romac & Julie Poulain & Guillaume Bourdin & Guillaume Iwankow & Clémentine Moulin & Maren Ziegler & , 2023. "Ecology of Endozoicomonadaceae in three coral genera across the Pacific Ocean," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    4. C. E. Dubé & M. Ziegler & A. Mercière & E. Boissin & S. Planes & C. A. -F. Bourmaud & C. R. Voolstra, 2021. "Naturally occurring fire coral clones demonstrate a genetic and environmental basis of microbiome composition," Nature Communications, Nature, vol. 12(1), pages 1-12, December.
    5. Lauren F. Messer & David G. Bourne & Steven J. Robbins & Megan Clay & Sara C. Bell & Simon J. McIlroy & Gene W. Tyson, 2024. "A genome-centric view of the role of the Acropora kenti microbiome in coral health and resilience," Nature Communications, Nature, vol. 15(1), pages 1-15, December.

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