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Enhancer-associated long non-coding RNA LEENE regulates endothelial nitric oxide synthase and endothelial function

Author

Listed:
  • Yifei Miao

    (Beckman Research Institute, City of Hope)

  • Nassim E. Ajami

    (University of California at San Diego)

  • Tse-Shun Huang

    (University of California at San Diego)

  • Feng-Mao Lin

    (Beckman Research Institute, City of Hope)

  • Chih-Hong Lou

    (Beckman Research Institute, City of Hope)

  • Yun-Ting Wang

    (Beckman Research Institute, City of Hope)

  • Shuai Li

    (University of California at San Diego)

  • Jian Kang

    (University of California at San Diego)

  • Hannah Munkacsi

    (Beckman Research Institute, City of Hope)

  • Mano R. Maurya

    (University of California at San Diego)

  • Shakti Gupta

    (University of California at San Diego)

  • Shu Chien

    (University of California at San Diego
    University of California at San Diego)

  • Shankar Subramaniam

    (University of California at San Diego
    University of California San Diego)

  • Zhen Chen

    (Beckman Research Institute, City of Hope)

Abstract

The optimal expression of endothelial nitric oxide synthase (eNOS), the hallmark of endothelial homeostasis, is vital to vascular function. Dynamically regulated by various stimuli, eNOS expression is modulated at transcriptional, post-transcriptional, and post-translational levels. However, epigenetic modulations of eNOS, particularly through long non-coding RNAs (lncRNAs) and chromatin remodeling, remain to be explored. Here we identify an enhancer-associated lncRNA that enhances eNOS expression (LEENE). Combining RNA-sequencing and chromatin conformation capture methods, we demonstrate that LEENE is co-regulated with eNOS and that its enhancer resides in proximity to eNOS promoter in endothelial cells (ECs). Gain- and Loss-of-function of LEENE differentially regulate eNOS expression and EC function. Mechanistically, LEENE facilitates the recruitment of RNA Pol II to the eNOS promoter to enhance eNOS nascent RNA transcription. Our findings unravel a new layer in eNOS regulation and provide novel insights into cardiovascular regulation involving endothelial function.

Suggested Citation

  • Yifei Miao & Nassim E. Ajami & Tse-Shun Huang & Feng-Mao Lin & Chih-Hong Lou & Yun-Ting Wang & Shuai Li & Jian Kang & Hannah Munkacsi & Mano R. Maurya & Shakti Gupta & Shu Chien & Shankar Subramaniam , 2018. "Enhancer-associated long non-coding RNA LEENE regulates endothelial nitric oxide synthase and endothelial function," Nature Communications, Nature, vol. 9(1), pages 1-13, December.
  • Handle: RePEc:nat:natcom:v:9:y:2018:i:1:d:10.1038_s41467-017-02113-y
    DOI: 10.1038/s41467-017-02113-y
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    Cited by:

    1. Riccardo Calandrelli & Xingzhao Wen & John Lalith Charles Richard & Zhifei Luo & Tri C. Nguyen & Chien-Ju Chen & Zhijie Qi & Shuanghong Xue & Weizhong Chen & Zhangming Yan & Weixin Wu & Kathia Zaleta-, 2023. "Genome-wide analysis of the interplay between chromatin-associated RNA and 3D genome organization in human cells," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
    2. Jan-Renier Moonen & James Chappell & Minyi Shi & Tsutomu Shinohara & Dan Li & Maxwell R. Mumbach & Fan Zhang & Ramesh V. Nair & Joseph Nasser & Daniel H. Mai & Shalina Taylor & Lingli Wang & Ross J. M, 2022. "KLF4 recruits SWI/SNF to increase chromatin accessibility and reprogram the endothelial enhancer landscape under laminar shear stress," Nature Communications, Nature, vol. 13(1), pages 1-16, December.

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