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‘ARMAN’ archaea depend on association with euryarchaeal host in culture and in situ

Author

Listed:
  • Olga V. Golyshina

    (Bangor University)

  • Stepan V. Toshchakov

    (Immanuel Kant Baltic Federal University)

  • Kira S. Makarova

    (National Center for Biotechnology Information, National Library of Medicine—National Institutes of Health)

  • Sergey N. Gavrilov

    (Winogradsky Institute of Microbiology, Research Center for Biotechnology Russian Academy of Sciences)

  • Aleksei A. Korzhenkov

    (Immanuel Kant Baltic Federal University)

  • Violetta La Cono

    (Institute for Coastal Marine Environment, CNR)

  • Erika Arcadi

    (Institute for Coastal Marine Environment, CNR)

  • Taras Y. Nechitaylo

    (Max Planck Institute for Chemical Ecology)

  • Manuel Ferrer

    (Institute of Catalysis CSIC)

  • Ilya V. Kublanov

    (Immanuel Kant Baltic Federal University
    Winogradsky Institute of Microbiology, Research Center for Biotechnology Russian Academy of Sciences)

  • Yuri I. Wolf

    (National Center for Biotechnology Information, National Library of Medicine—National Institutes of Health)

  • Michail M. Yakimov

    (Immanuel Kant Baltic Federal University
    Institute for Coastal Marine Environment, CNR)

  • Peter N. Golyshin

    (Bangor University)

Abstract

Intriguing, yet uncultured ‘ARMAN’-like archaea are metabolically dependent on other members of the microbial community. It remains uncertain though which hosts they rely upon, and, because of the lack of complete genomes, to what extent. Here, we report the co-culturing of ARMAN-2-related organism, Mia14, with Cuniculiplasma divulgatum PM4 during the isolation of this strain from acidic streamer in Parys Mountain (Isle of Anglesey, UK). Mia14 is highly enriched in the binary culture (ca. 10% genomic reads) and its ungapped 0.95 Mbp genome points at severe voids in central metabolic pathways, indicating dependence on the host, C. divulgatum PM4. Analysis of C. divulgatum isolates from different sites and shotgun sequence data of Parys Mountain samples suggests an extensive genetic exchange between Mia14 and hosts in situ. Within the subset of organisms with high-quality genomic assemblies representing the ‘DPANN’ superphylum, the Mia14 lineage has had the largest gene flux, with dozens of genes gained that are implicated in the host interaction.

Suggested Citation

  • Olga V. Golyshina & Stepan V. Toshchakov & Kira S. Makarova & Sergey N. Gavrilov & Aleksei A. Korzhenkov & Violetta La Cono & Erika Arcadi & Taras Y. Nechitaylo & Manuel Ferrer & Ilya V. Kublanov & Yu, 2017. "‘ARMAN’ archaea depend on association with euryarchaeal host in culture and in situ," Nature Communications, Nature, vol. 8(1), pages 1-12, December.
    • Handle: RePEc:nat:natcom:v:8:y:2017:i:1:d:10.1038_s41467-017-00104-7
    DOI: 10.1038/s41467-017-00104-7
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    Cited by:

    1. Su Ding & Joshua N. Hamm & Nicole J. Bale & Jaap S. Sinninghe Damsté & Anja Spang, 2024. "Selective lipid recruitment by an archaeal DPANN symbiont from its host," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    2. Yan-Ling Qi & Ya-Ting Chen & Yuan-Guo Xie & Yu-Xian Li & Yang-Zhi Rao & Meng-Meng Li & Qi-Jun Xie & Xing-Ru Cao & Lei Chen & Yan-Ni Qu & Zhen-Xuan Yuan & Zhi-Chao Xiao & Lu Lu & Jian-Yu Jiao & Wen-She, 2024. "Analysis of nearly 3000 archaeal genomes from terrestrial geothermal springs sheds light on interconnected biogeochemical processes," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
    3. Joshua N. Hamm & Yan Liao & Andriko Kügelgen & Nina Dombrowski & Evan Landers & Christopher Brownlee & Emma M. V. Johansson & Renee M. Whan & Matthew A. B. Baker & Buzz Baum & Tanmay A. M. Bharat & Ia, 2024. "The parasitic lifestyle of an archaeal symbiont," Nature Communications, Nature, vol. 15(1), pages 1-13, December.

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