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Development of patient-derived lymphomoids with preserved tumor architecture for lymphoma therapy screening

Author

Listed:
  • Albert Santamaria-Martínez

    (École Polytechnique Fédérale de Lausanne (EPFL)
    Swiss Cancer Center Léman)

  • Justine Epiney

    (École Polytechnique Fédérale de Lausanne (EPFL)
    Swiss Cancer Center Léman
    Centre Hospitalier Universitaire Vaudois (CHUV))

  • Divyanshu Srivastava

    (École Polytechnique Fédérale de Lausanne (EPFL)
    Swiss Cancer Center Léman
    University of Lausanne
    Swiss Institute of Bioinformatics (SIB))

  • Daniele Tavernari

    (École Polytechnique Fédérale de Lausanne (EPFL)
    Swiss Cancer Center Léman
    University of Lausanne
    Swiss Institute of Bioinformatics (SIB))

  • Marco Varrone

    (Swiss Cancer Center Léman
    University of Lausanne
    Swiss Institute of Bioinformatics (SIB))

  • Dina Milowich

    (Hôpital du Valais)

  • Igor Letovanec

    (Hôpital du Valais)

  • Thorsten Krueger

    (CHUV)

  • Rafael Duran

    (Centre Hospitalier Universitaire Vaudois (CHUV))

  • Giovanni Ciriello

    (Swiss Cancer Center Léman
    University of Lausanne
    Swiss Institute of Bioinformatics (SIB))

  • Anne Cairoli

    (Centre Hospitalier Universitaire Vaudois (CHUV))

  • Elisa Oricchio

    (École Polytechnique Fédérale de Lausanne (EPFL)
    Swiss Cancer Center Léman)

Abstract

The efficacy of anti-cancer therapies depends on the genomic composition of the tumor, its microenvironment, spatial organization, and intra-tumor heterogeneity. B-cell lymphomas are a heterogeneous group of tumors emerging from B-cells at different stages of differentiation and exhibiting tumor-specific interactions with the tumor microenvironment. Thus, the effect of drug treatments can be influenced by the tumor composition and functional interactions among immune cells. Here, we develop a platform to maintain small fragments of human lymphoma tissue in culture for several days, and use them to test response to small molecules. We collect 27 patient samples representative of different lymphoma subtypes, and establish ex vivo tissue fragments that retain histological, cellular, and molecular characteristics of the original tissue, here referred to as lymphomoids. Using lymphomoids, we test sensitivity to several clinically approved drugs in parallel and examine tissue remodeling upon treatment. Moreover, when this information is available, we show that the effect of the inhibitors observed in lymphomoids is consistent with the patients’ response in the clinic. Thus, lymphomoids represent an innovative ex vivo model to assess the effect of anti-cancer therapies while preserving the tissue structure and its components.

Suggested Citation

  • Albert Santamaria-Martínez & Justine Epiney & Divyanshu Srivastava & Daniele Tavernari & Marco Varrone & Dina Milowich & Igor Letovanec & Thorsten Krueger & Rafael Duran & Giovanni Ciriello & Anne Cai, 2024. "Development of patient-derived lymphomoids with preserved tumor architecture for lymphoma therapy screening," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-55098-w
    DOI: 10.1038/s41467-024-55098-w
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    1. Laura Pasqualucci & David Dominguez-Sola & Annalisa Chiarenza & Giulia Fabbri & Adina Grunn & Vladimir Trifonov & Lawryn H. Kasper & Stephanie Lerach & Hongyan Tang & Jing Ma & Davide Rossi & Amy Chad, 2011. "Inactivating mutations of acetyltransferase genes in B-cell lymphoma," Nature, Nature, vol. 471(7337), pages 189-195, March.
    2. Ryan D. Morin & Maria Mendez-Lago & Andrew J. Mungall & Rodrigo Goya & Karen L. Mungall & Richard D. Corbett & Nathalie A. Johnson & Tesa M. Severson & Readman Chiu & Matthew Field & Shaun Jackman & M, 2011. "Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma," Nature, Nature, vol. 476(7360), pages 298-303, August.
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