Integrative spatial and genomic analysis of tumor heterogeneity with Tumoroscope
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DOI: 10.1038/s41467-024-53374-3
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- Tongtong Zhao & Zachary D. Chiang & Julia W. Morriss & Lindsay M. LaFave & Evan M. Murray & Isabella Del Priore & Kevin Meli & Caleb A. Lareau & Naeem M. Nadaf & Jilong Li & Andrew S. Earl & Evan Z. M, 2022. "Spatial genomics enables multi-modal study of clonal heterogeneity in tissues," Nature, Nature, vol. 601(7891), pages 85-91, January.
- Emelie Berglund & Jonas Maaskola & Niklas Schultz & Stefanie Friedrich & Maja Marklund & Joseph Bergenstråhle & Firas Tarish & Anna Tanoglidi & Sanja Vickovic & Ludvig Larsson & Fredrik Salmén & Chri, 2018. "Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity," Nature Communications, Nature, vol. 9(1), pages 1-13, December.
- Neil Vasan & José Baselga & David M. Hyman, 2019. "A view on drug resistance in cancer," Nature, Nature, vol. 575(7782), pages 299-309, November.
- Andrew Erickson & Mengxiao He & Emelie Berglund & Maja Marklund & Reza Mirzazadeh & Niklas Schultz & Linda Kvastad & Alma Andersson & Ludvig Bergenstråhle & Joseph Bergenstråhle & Ludvig Larsson & Lei, 2022. "Spatially resolved clonal copy number alterations in benign and malignant tissue," Nature, Nature, vol. 608(7922), pages 360-367, August.
- Salem Malikic & Katharina Jahn & Jack Kuipers & S. Cenk Sahinalp & Niko Beerenwinkel, 2019. "Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data," Nature Communications, Nature, vol. 10(1), pages 1-12, December.
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