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Time-reversal symmetry breaking in the chemosensory array reveals a general mechanism for dissipation-enhanced cooperative sensing

Author

Listed:
  • David Hathcock

    (IBM T. J. Watson Research Center)

  • Qiwei Yu

    (IBM T. J. Watson Research Center
    Princeton University)

  • Yuhai Tu

    (IBM T. J. Watson Research Center)

Abstract

The Escherichia coli chemoreceptors form an extensive array that achieves cooperative and adaptive sensing of extracellular signals. The receptors control the activity of histidine kinase CheA, which drives a nonequilibrium phosphorylation-dephosphorylation reaction cycle for response regulator CheY. Cooperativity and dissipation are both important aspects of chemotaxis signaling, yet their consequences have only been studied separately. Recent single-cell FRET measurements revealed that kinase activity of the array spontaneously switches between active and inactive states, with asymmetric switching times that signify time-reversal symmetry breaking in the underlying dynamics. Here, we present a nonequilibrium lattice model of the chemosensory array, which demonstrates that the observed asymmetric switching dynamics can only be explained by an interplay between the dissipative reactions within individual core units and the cooperative coupling between neighboring units. Microscopically, the switching time asymmetry originates from irreversible transition paths. The model shows that strong dissipation enables sensitive and rapid signaling response by relieving the speed-sensitivity trade-off, which can be tested by future single-cell experiments. Overall, our model provides a general framework for studying biological complexes composed of coupled subunits that are individually driven by dissipative cycles and the rich nonequilibrium physics within.

Suggested Citation

  • David Hathcock & Qiwei Yu & Yuhai Tu, 2024. "Time-reversal symmetry breaking in the chemosensory array reveals a general mechanism for dissipation-enhanced cooperative sensing," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-52799-0
    DOI: 10.1038/s41467-024-52799-0
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    References listed on IDEAS

    as
    1. Xu Han & Dongliang Zhang & Lu Hong & Daqi Yu & Zhaolong Wu & Tian Yang & Michael Rust & Yuhai Tu & Qi Ouyang, 2023. "Determining subunit-subunit interaction from statistics of cryo-EM images: observation of nearest-neighbor coupling in a circadian clock protein complex," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    2. Alise R. Muok & Davi R. Ortega & Kurni Kurniyati & Wen Yang & Zachary A. Maschmann & Adam Sidi Mabrouk & Chunhao Li & Brian R. Crane & Ariane Briegel, 2020. "Atypical chemoreceptor arrays accommodate high membrane curvature," Nature Communications, Nature, vol. 11(1), pages 1-13, December.
    3. Chenyi Fei & Yuansheng Cao & Qi Ouyang & Yuhai Tu, 2018. "Design principles for enhancing phase sensitivity and suppressing phase fluctuations simultaneously in biochemical oscillatory systems," Nature Communications, Nature, vol. 9(1), pages 1-10, December.
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