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Unveiling the solution structure of a DNA duplex with continuous silver-modified Watson-Crick base pairs

Author

Listed:
  • Uroš Javornik

    (National Institute of Chemistry
    University of Ljubljana)

  • Antonio Pérez-Romero

    (Universidad de Granada)

  • Carmen López-Chamorro

    (Universidad de Granada)

  • Rachelle M. Smith

    (Oregon State University)

  • José A. Dobado

    (Universidad de Granada)

  • Oscar Palacios

    (Universitat Autònoma de Barcelona)

  • Mrinal K. Bera

    (University of Chicago)

  • May Nyman

    (Oregon State University)

  • Janez Plavec

    (National Institute of Chemistry
    University of Ljubljana)

  • Miguel A. Galindo

    (Universidad de Granada)

Abstract

The challenge of transforming organized DNA structures into their metallized counterparts persists in the scientific field. In this context, utilizing DNA molecules modified with 7-deazapurine, provides a transformative solution. In this study, we present the solution structure of a DNA duplex that can be transformed into its metallized equivalent while retaining the natural base pairing arrangement through the creation of silver-modified Watson-Crick base pairs. Unlike previously documented X-ray structures, our research demonstrates the feasibility of preserving the intrinsic DNA self-assembly while incorporating AgI into the double helix, illustrating that the binding of silver does not disrupt the canonical base-pairing organization. Moreover, in our case, the uninterrupted AgI chain deviates from forming conventional straight linear chains; instead, it adheres to a helical arrangement dictated by the underlying DNA structure. This research challenges conventional assumptions and opens the door to precisely design structures based on the organization of highly stable Ag-DNA assemblies.

Suggested Citation

  • Uroš Javornik & Antonio Pérez-Romero & Carmen López-Chamorro & Rachelle M. Smith & José A. Dobado & Oscar Palacios & Mrinal K. Bera & May Nyman & Janez Plavec & Miguel A. Galindo, 2024. "Unveiling the solution structure of a DNA duplex with continuous silver-modified Watson-Crick base pairs," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-51876-8
    DOI: 10.1038/s41467-024-51876-8
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    References listed on IDEAS

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    1. Lamia L. G. Al-Mahamad & Osama El-Zubir & David G. Smith & Benjamin R. Horrocks & Andrew Houlton, 2017. "A coordination polymer for the site-specific integration of semiconducting sequences into DNA-based materials," Nature Communications, Nature, vol. 8(1), pages 1-7, December.
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