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Large-scale calcium imaging reveals a systematic V4 map for encoding natural scenes

Author

Listed:
  • Tianye Wang

    (Peking University School of Life Sciences
    Peking-Tsinghua Center for Life Sciences
    IDG/McGovern Institute for Brain Research at Peking University
    Peking University)

  • Tai Sing Lee

    (Carnegie Mellon University)

  • Haoxuan Yao

    (Peking University School of Life Sciences
    Peking-Tsinghua Center for Life Sciences
    IDG/McGovern Institute for Brain Research at Peking University
    Peking University)

  • Jiayi Hong

    (Peking University School of Life Sciences)

  • Yang Li

    (Peking University School of Life Sciences
    Peking-Tsinghua Center for Life Sciences
    IDG/McGovern Institute for Brain Research at Peking University
    Peking University)

  • Hongfei Jiang

    (Peking University School of Life Sciences
    Peking-Tsinghua Center for Life Sciences
    IDG/McGovern Institute for Brain Research at Peking University
    Peking University)

  • Ian Max Andolina

    (Chinese Academy of Sciences)

  • Shiming Tang

    (Peking University School of Life Sciences
    Peking-Tsinghua Center for Life Sciences
    IDG/McGovern Institute for Brain Research at Peking University
    Peking University)

Abstract

Biological visual systems have evolved to process natural scenes. A full understanding of visual cortical functions requires a comprehensive characterization of how neuronal populations in each visual area encode natural scenes. Here, we utilized widefield calcium imaging to record V4 cortical response to tens of thousands of natural images in male macaques. Using this large dataset, we developed a deep-learning digital twin of V4 that allowed us to map the natural image preferences of the neural population at 100-µm scale. This detailed map revealed a diverse set of functional domains in V4, each encoding distinct natural image features. We validated these model predictions using additional widefield imaging and single-cell resolution two-photon imaging. Feature attribution analysis revealed that these domains lie along a continuum from preferring spatially localized shape features to preferring spatially dispersed surface features. These results provide insights into the organizing principles that govern natural scene encoding in V4.

Suggested Citation

  • Tianye Wang & Tai Sing Lee & Haoxuan Yao & Jiayi Hong & Yang Li & Hongfei Jiang & Ian Max Andolina & Shiming Tang, 2024. "Large-scale calcium imaging reveals a systematic V4 map for encoding natural scenes," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-50821-z
    DOI: 10.1038/s41467-024-50821-z
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    References listed on IDEAS

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    1. N. Apurva Ratan Murty & Pouya Bashivan & Alex Abate & James J. DiCarlo & Nancy Kanwisher, 2021. "Computational models of category-selective brain regions enable high-throughput tests of selectivity," Nature Communications, Nature, vol. 12(1), pages 1-14, December.
    2. Katrin Franke & Konstantin F. Willeke & Kayla Ponder & Mario Galdamez & Na Zhou & Taliah Muhammad & Saumil Patel & Emmanouil Froudarakis & Jacob Reimer & Fabian H. Sinz & Andreas S. Tolias, 2022. "State-dependent pupil dilation rapidly shifts visual feature selectivity," Nature, Nature, vol. 610(7930), pages 128-134, October.
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