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A histone demethylase links the loss of plasticity to nongenetic inheritance and morphological change

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  • Nicholas A. Levis

    (Indiana University)

  • Erik J. Ragsdale

    (Indiana University)

Abstract

Plasticity is a widespread feature of development, enabling phenotypic change based on the environment. Although the evolutionary loss of plasticity has been linked both theoretically and empirically to increased rates of phenotypic diversification, molecular insights into how this process might unfold are generally lacking. Here, we show that a regulator of nongenetic inheritance links evolutionary loss of plasticity in nature to changes in plasticity and morphology as selected in the laboratory. Across nematodes of Diplogastridae, which ancestrally had a polyphenism, or discrete plasticity, in their feeding morphology, we use molecular evolutionary analyses to screen for change associated with independent losses of plasticity. Having inferred a set of ancestrally polyphenism-biased genes from phylogenetically informed gene-knockouts and gene-expression comparisons, selection signatures associated with plasticity’s loss identify the histone H3K4 di/monodemethylase gene spr-5/LSD1/KDM1A. Manipulations of this gene affect both sensitivity and variation in plastic morphologies, and artificial selection of manipulated lines drive multigenerational shifts in these phenotypes. Our findings thus give mechanistic insight into how traits are modified as they traverse the continuum of greater to lesser environmental sensitivity.

Suggested Citation

  • Nicholas A. Levis & Erik J. Ragsdale, 2023. "A histone demethylase links the loss of plasticity to nongenetic inheritance and morphological change," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-44306-8
    DOI: 10.1038/s41467-023-44306-8
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    References listed on IDEAS

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    1. Bates, Douglas & Mächler, Martin & Bolker, Ben & Walker, Steve, 2015. "Fitting Linear Mixed-Effects Models Using lme4," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 67(i01).
    2. Linh T. Bui & Nicholas A. Ivers & Erik J. Ragsdale, 2018. "Author Correction: A sulfotransferase dosage-dependently regulates mouthpart polyphenism in the nematode Pristionchus pacificus," Nature Communications, Nature, vol. 9(1), pages 1-2, December.
    3. Gilberto Bento & Akira Ogawa & Ralf J. Sommer, 2010. "Co-option of the hormone-signalling module dafachronic acid–DAF-12 in nematode evolution," Nature, Nature, vol. 466(7305), pages 494-497, July.
    4. Vincent Ranwez & Sébastien Harispe & Frédéric Delsuc & Emmanuel J P Douzery, 2011. "MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons," PLOS ONE, Public Library of Science, vol. 6(9), pages 1-10, September.
    5. Linh T. Bui & Nicholas A. Ivers & Erik J. Ragsdale, 2018. "A sulfotransferase dosage-dependently regulates mouthpart polyphenism in the nematode Pristionchus pacificus," Nature Communications, Nature, vol. 9(1), pages 1-10, December.
    6. Vahan Serobyan & Hua Xiao & Suryesh Namdeo & Christian Rödelsperger & Bogdan Sieriebriennikov & Hanh Witte & Waltraud Röseler & Ralf J. Sommer, 2016. "Chromatin remodelling and antisense-mediated up-regulation of the developmental switch gene eud-1 control predatory feeding plasticity," Nature Communications, Nature, vol. 7(1), pages 1-8, November.
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