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Deep learning-enabled realistic virtual histology with ultraviolet photoacoustic remote sensing microscopy

Author

Listed:
  • Matthew T. Martell

    (University of Alberta)

  • Nathaniel J. M. Haven

    (University of Alberta)

  • Brendyn D. Cikaluk

    (University of Alberta)

  • Brendon S. Restall

    (University of Alberta)

  • Ewan A. McAlister

    (University of Alberta)

  • Rohan Mittal

    (University of Alberta)

  • Benjamin A. Adam

    (University of Alberta)

  • Nadia Giannakopoulos

    (University of Alberta)

  • Lashan Peiris

    (University of Alberta)

  • Sveta Silverman

    (University of Alberta)

  • Jean Deschenes

    (University of Alberta)

  • Xingyu Li

    (University of Alberta)

  • Roger J. Zemp

    (University of Alberta)

Abstract

The goal of oncologic surgeries is complete tumor resection, yet positive margins are frequently found postoperatively using gold standard H&E-stained histology methods. Frozen section analysis is sometimes performed for rapid intraoperative margin evaluation, albeit with known inaccuracies. Here, we introduce a label-free histological imaging method based on an ultraviolet photoacoustic remote sensing and scattering microscope, combined with unsupervised deep learning using a cycle-consistent generative adversarial network for realistic virtual staining. Unstained tissues are scanned at rates of up to 7 mins/cm2, at resolution equivalent to 400x digital histopathology. Quantitative validation suggests strong concordance with conventional histology in benign and malignant prostate and breast tissues. In diagnostic utility studies we demonstrate a mean sensitivity and specificity of 0.96 and 0.91 in breast specimens, and respectively 0.87 and 0.94 in prostate specimens. We also find virtual stain quality is preferred (P = 0.03) compared to frozen section analysis in a blinded survey of pathologists.

Suggested Citation

  • Matthew T. Martell & Nathaniel J. M. Haven & Brendyn D. Cikaluk & Brendon S. Restall & Ewan A. McAlister & Rohan Mittal & Benjamin A. Adam & Nadia Giannakopoulos & Lashan Peiris & Sveta Silverman & Je, 2023. "Deep learning-enabled realistic virtual histology with ultraviolet photoacoustic remote sensing microscopy," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-41574-2
    DOI: 10.1038/s41467-023-41574-2
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    References listed on IDEAS

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    1. Michael G Giacomelli & Lennart Husvogt & Hilde Vardeh & Beverly E Faulkner-Jones & Joachim Hornegger & James L Connolly & James G Fujimoto, 2016. "Virtual Hematoxylin and Eosin Transillumination Microscopy Using Epi-Fluorescence Imaging," PLOS ONE, Public Library of Science, vol. 11(8), pages 1-13, August.
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    Cited by:

    1. Lingbo Jin & Yubo Tang & Jackson B. Coole & Melody T. Tan & Xuan Zhao & Hawraa Badaoui & Jacob T. Robinson & Michelle D. Williams & Nadarajah Vigneswaran & Ann M. Gillenwater & Rebecca R. Richards-Kor, 2024. "DeepDOF-SE: affordable deep-learning microscopy platform for slide-free histology," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    2. Yuzhu Li & Nir Pillar & Jingxi Li & Tairan Liu & Di Wu & Songyu Sun & Guangdong Ma & Kevin Haan & Luzhe Huang & Yijie Zhang & Sepehr Hamidi & Anatoly Urisman & Tal Keidar Haran & William Dean Wallace , 2024. "Virtual histological staining of unlabeled autopsy tissue," Nature Communications, Nature, vol. 15(1), pages 1-17, December.

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    1. Lingbo Jin & Yubo Tang & Jackson B. Coole & Melody T. Tan & Xuan Zhao & Hawraa Badaoui & Jacob T. Robinson & Michelle D. Williams & Nadarajah Vigneswaran & Ann M. Gillenwater & Rebecca R. Richards-Kor, 2024. "DeepDOF-SE: affordable deep-learning microscopy platform for slide-free histology," Nature Communications, Nature, vol. 15(1), pages 1-14, December.

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