Transposable elements maintain genome-wide heterozygosity in inbred populations
Author
Abstract
Suggested Citation
DOI: 10.1038/s41467-022-34795-4
Download full text from publisher
References listed on IDEAS
- Pierre Baduel & Leandro Quadrana & Ben Hunter & Kirsten Bomblies & Vincent Colot, 2019. "Relaxed purifying selection in autopolyploids drives transposable element over-accumulation which provides variants for local adaptation," Nature Communications, Nature, vol. 10(1), pages 1-10, December.
- Leandro Quadrana & Mathilde Etcheverry & Arthur Gilly & Erwann Caillieux & Mohammed-Amin Madoui & Julie Guy & Amanda Bortolini Silveira & Stefan Engelen & Victoire Baillet & Patrick Wincker & Jean-Mar, 2019. "Transposition favors the generation of large effect mutations that may facilitate rapid adaption," Nature Communications, Nature, vol. 10(1), pages 1-10, December.
- Hude Mao & Hongwei Wang & Shengxue Liu & Zhigang Li & Xiaohong Yang & Jianbing Yan & Jiansheng Li & Lam-Son Phan Tran & Feng Qin, 2015. "A transposable element in a NAC gene is associated with drought tolerance in maize seedlings," Nature Communications, Nature, vol. 6(1), pages 1-13, November.
- Thomas Wicker & Yeisoo Yu & Georg Haberer & Klaus F. X. Mayer & Pradeep Reddy Marri & Steve Rounsley & Mingsheng Chen & Andrea Zuccolo & Olivier Panaud & Rod A. Wing & Stefan Roffler, 2016. "DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses," Nature Communications, Nature, vol. 7(1), pages 1-9, November.
- Susanna Atwell & Yu S. Huang & Bjarni J. Vilhjálmsson & Glenda Willems & Matthew Horton & Yan Li & Dazhe Meng & Alexander Platt & Aaron M. Tarone & Tina T. Hu & Rong Jiang & N. Wayan Muliyati & Xu Zha, 2010. "Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines," Nature, Nature, vol. 465(7298), pages 627-631, June.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Minghui Kang & Haolin Wu & Huanhuan Liu & Wenyu Liu & Mingjia Zhu & Yu Han & Wei Liu & Chunlin Chen & Yan Song & Luna Tan & Kangqun Yin & Yusen Zhao & Zhen Yan & Shangling Lou & Yanjun Zan & Jianquan , 2023. "The pan-genome and local adaptation of Arabidopsis thaliana," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
- Hideki Yoshida & Ko Hirano & Kenji Yano & Fanmiao Wang & Masaki Mori & Mayuko Kawamura & Eriko Koketsu & Masako Hattori & Reynante Lacsamana Ordonio & Peng Huang & Eiji Yamamoto & Makoto Matsuoka, 2022. "Genome-wide association study identifies a gene responsible for temperature-dependent rice germination," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
- Yuxuan Duan & Hongliang Zheng & Haoran Wen & Di Qu & Jingnan Cui & Chong Li & Jingguo Wang & Hualong Liu & Luomiao Yang & Yan Jia & Wei Xin & Shuangshuang Li & Detang Zou, 2022. "Identification of Candidate Genes for Salt Tolerance at the Germination Stage in Japonica Rice by Genome-Wide Association Analysis," Agriculture, MDPI, vol. 12(10), pages 1-15, October.
- Muhammad Saeed & Farhan Ullah & Liaqat Shah & Waqas Ahmad & Murad Ali & Fazal Munsif & Ahmad Zubair & Muhammad Ibrahim & Syed Mushtaq Ahmed Shah & Hammad Uddin & Chen Can & Si Hongqi & Ma Chuanxi, 2022. "Identification of Three Novel QTLs Associated with Yellow Rust Resistance in Wheat ( Triticum aestivum L.) Anong-179/Khaista-17 F 2 Population," Sustainability, MDPI, vol. 14(12), pages 1-15, June.
- Marine Duhamel & Michael E. Hood & Ricardo C. Rodríguez de la Vega & Tatiana Giraud, 2023. "Dynamics of transposable element accumulation in the non-recombining regions of mating-type chromosomes in anther-smut fungi," Nature Communications, Nature, vol. 14(1), pages 1-18, December.
- Ganwen Zhang & Jianini Zhao & Jieru Wang & Guo Lin & Lin Li & Fengfei Ban & Meiting Zhu & Yangjun Wen & Jin Zhang, 2024. "An Improved Expectation–Maximization Bayesian Algorithm for GWAS," Mathematics, MDPI, vol. 12(13), pages 1-14, June.
- Yasuhiro Sato & Rie Shimizu-Inatsugi & Kazuya Takeda & Bernhard Schmid & Atsushi J. Nagano & Kentaro K. Shimizu, 2024. "Reducing herbivory in mixed planting by genomic prediction of neighbor effects in the field," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
- Li He & Huan Huang & Mariem Bradai & Cheng Zhao & Yin You & Jun Ma & Lun Zhao & Rosa Lozano-Durán & Jian-Kang Zhu, 2022. "DNA methylation-free Arabidopsis reveals crucial roles of DNA methylation in regulating gene expression and development," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
- Qian Li & Xuebing Ying & Yashu Yang & Wei Gao, 2024. "Genetic Diversity and Genome-Wide Association Study of Pleurotus pulmonarius Germplasm," Agriculture, MDPI, vol. 14(11), pages 1-19, November.
- Tuomas Hämälä & Christopher Moore & Laura Cowan & Matthew Carlile & David Gopaulchan & Marie K. Brandrud & Siri Birkeland & Matthew Loose & Filip Kolář & Marcus A. Koch & Levi Yant, 2024. "Impact of whole-genome duplications on structural variant evolution in Cochlearia," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
- Yuyun Zhang & Zijuan Li & Jinyi Liu & Yu’e Zhang & Luhuan Ye & Yuan Peng & Haoyu Wang & Huishan Diao & Yu Ma & Meiyue Wang & Yilin Xie & Tengfei Tang & Yili Zhuang & Wan Teng & Yiping Tong & Wenli Zha, 2022. "Transposable elements orchestrate subgenome-convergent and -divergent transcription in common wheat," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
- Victoria L. Sork & Shawn J. Cokus & Sorel T. Fitz-Gibbon & Aleksey V. Zimin & Daniela Puiu & Jesse A. Garcia & Paul F. Gugger & Claudia L. Henriquez & Ying Zhen & Kirk E. Lohmueller & Matteo Pellegrin, 2022. "High-quality genome and methylomes illustrate features underlying evolutionary success of oaks," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
- Apolo-Apolo, O.E. & Martínez-Guanter, J. & Pérez-Ruiz, M. & Egea, G., 2020. "Design and assessment of new artificial reference surfaces for real time monitoring of crop water stress index in maize," Agricultural Water Management, Elsevier, vol. 240(C).
- Huang, Lucy & Buzbas, Erkan O. & Rosenberg, Noah A., 2013. "Genotype imputation in a coalescent model with infinitely-many-sites mutation," Theoretical Population Biology, Elsevier, vol. 87(C), pages 62-74.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-34795-4. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.