Robust and accurate estimation of paralog-specific copy number for duplicated genes using whole-genome sequencing
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DOI: 10.1038/s41467-022-30930-3
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- Ryan E. Mills & Klaudia Walter & Chip Stewart & Robert E. Handsaker & Ken Chen & Can Alkan & Alexej Abyzov & Seungtai Chris Yoon & Kai Ye & R. Keira Cheetham & Asif Chinwalla & Donald F. Conrad & Yuta, 2011. "Mapping copy number variation by population-scale genome sequencing," Nature, Nature, vol. 470(7332), pages 59-65, February.
- Daniel Taliun & Daniel N. Harris & Michael D. Kessler & Jedidiah Carlson & Zachary A. Szpiech & Raul Torres & Sarah A. Gagliano Taliun & André Corvelo & Stephanie M. Gogarten & Hyun Min Kang & Achille, 2021. "Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program," Nature, Nature, vol. 590(7845), pages 290-299, February.
- Ernest Turro & William J. Astle & Karyn Megy & Stefan Gräf & Daniel Greene & Olga Shamardina & Hana Lango Allen & Alba Sanchis-Juan & Mattia Frontini & Chantal Thys & Jonathan Stephens & Rutendo Mapet, 2020. "Whole-genome sequencing of patients with rare diseases in a national health system," Nature, Nature, vol. 583(7814), pages 96-102, July.
- Joshua D. Backman & Alexander H. Li & Anthony Marcketta & Dylan Sun & Joelle Mbatchou & Michael D. Kessler & Christian Benner & Daren Liu & Adam E. Locke & Suganthi Balasubramanian & Ashish Yadav & Ni, 2021. "Exome sequencing and analysis of 454,787 UK Biobank participants," Nature, Nature, vol. 599(7886), pages 628-634, November.
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