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Signatures of selection in recently domesticated macadamia

Author

Listed:
  • Jishan Lin

    (Fujian Agriculture and Forestry University)

  • Wenping Zhang

    (Fujian Agriculture and Forestry University)

  • Xingtan Zhang

    (Fujian Agriculture and Forestry University)

  • Xiaokai Ma

    (Fujian Agriculture and Forestry University)

  • Shengcheng Zhang

    (Fujian Agriculture and Forestry University)

  • Shuai Chen

    (Fujian Agriculture and Forestry University)

  • Yibin Wang

    (Fujian Agriculture and Forestry University)

  • Haifeng Jia

    (Fujian Agriculture and Forestry University)

  • Zhenyang Liao

    (Fujian Agriculture and Forestry University)

  • Jing Lin

    (Fujian Agriculture and Forestry University)

  • Mengting Zhu

    (Fujian Agriculture and Forestry University)

  • Xiuming Xu

    (Fujian Agriculture and Forestry University)

  • Mingxing Cai

    (Fujian Agriculture and Forestry University)

  • Hui Zeng

    (China Academy of Tropical Agricultural Sciences)

  • Jifeng Wan

    (China Academy of Tropical Agricultural Sciences)

  • Weihai Yang

    (China Academy of Tropical Agricultural Sciences)

  • Tracie Matsumoto

    (Pacific Basin Agricultural Research Center)

  • Craig Hardner

    (The University of Queensland)

  • Catherine J. Nock

    (Southern Cross University)

  • Ray Ming

    (University of Illinois at Urbana-Champaign)

Abstract

Macadamia is a high value nut crop that is recently domesticated, ideal for testing the effect of artificial selection. Here, we sequence the genome of Hawaiian cultivar ‘Kau’ and assemble into 794 Mb in 14 pseudo-chromosomes with 37,728 genes. Genome analysis reveals a whole-genome duplication event, occurred 46.8 million years ago. Gene expansions occurred in gene families involves in fatty acid biosynthesis. Gene duplication of MADS-Box transcription factors in proanthocyanidin biosynthesis are relevant for seed coat development. Genome re-sequencing of 112 accessions reveals the origin of Hawaiian cultivars from Mount Bauple in southeast Queensland in Australia. Selective sweeps are detected in macadamia cultivars, including genes involved in fatty acid biosynthesis, seed coat development, and heat stress response. Such strong effects of artificial selection in few generations reveals the genomic basis for ‘one-step operation’ for clonal crop domestication. The knowledge gained could accelerate domestication of new crops from wild species.

Suggested Citation

  • Jishan Lin & Wenping Zhang & Xingtan Zhang & Xiaokai Ma & Shengcheng Zhang & Shuai Chen & Yibin Wang & Haifeng Jia & Zhenyang Liao & Jing Lin & Mengting Zhu & Xiuming Xu & Mingxing Cai & Hui Zeng & Ji, 2022. "Signatures of selection in recently domesticated macadamia," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-021-27937-7
    DOI: 10.1038/s41467-021-27937-7
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    References listed on IDEAS

    as
    1. Michael D. Purugganan & Dorian Q. Fuller, 2009. "The nature of selection during plant domestication," Nature, Nature, vol. 457(7231), pages 843-848, February.
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    1. Oluwaseyi Shorinola & Rose Marks & Peter Emmrich & Chris Jones & Damaris Odeny & Mark A. Chapman, 2024. "Integrative and inclusive genomics to promote the use of underutilised crops," Nature Communications, Nature, vol. 15(1), pages 1-4, December.

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