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The tepary bean genome provides insight into evolution and domestication under heat stress

Author

Listed:
  • Samira Mafi Moghaddam

    (Michigan State University
    Michigan State University)

  • Atena Oladzad

    (North Dakota State University)

  • Chushin Koh

    (University of Saskatchewan
    University of Saskatchewan)

  • Larissa Ramsay

    (University of Saskatchewan)

  • John P. Hart

    (USDA-ARS-Tropical Agriculture Research Station)

  • Sujan Mamidi

    (HudsonAlpha Institute for Biotechnology)

  • Genevieve Hoopes

    (Michigan State University)

  • Avinash Sreedasyam

    (HudsonAlpha Institute for Biotechnology)

  • Andrew Wiersma

    (Michigan State University
    Michigan State University)

  • Dongyan Zhao

    (Michigan State University)

  • Jane Grimwood

    (HudsonAlpha Institute for Biotechnology
    Lawrence Berkeley National Laboratory)

  • John P. Hamilton

    (Michigan State University)

  • Jerry Jenkins

    (HudsonAlpha Institute for Biotechnology
    Lawrence Berkeley National Laboratory)

  • Brieanne Vaillancourt

    (Michigan State University)

  • Joshua C. Wood

    (Michigan State University)

  • Jeremy Schmutz

    (HudsonAlpha Institute for Biotechnology
    Lawrence Berkeley National Laboratory)

  • Sateesh Kagale

    (National Research Council Canada)

  • Timothy Porch

    (USDA-ARS-Tropical Agriculture Research Station)

  • Kirstin E. Bett

    (University of Saskatchewan)

  • C. Robin Buell

    (Michigan State University
    Michigan State University
    Michigan State University AgBioResearch)

  • Phillip E. McClean

    (North Dakota State University)

Abstract

Tepary bean (Phaseolus acutifolis A. Gray), native to the Sonoran Desert, is highly adapted to heat and drought. It is a sister species of common bean (Phaseolus vulgaris L.), the most important legume protein source for direct human consumption, and whose production is threatened by climate change. Here, we report on the tepary genome including exploration of possible mechanisms for resilience to moderate heat stress and a reduced disease resistance gene repertoire, consistent with adaptation to arid and hot environments. Extensive collinearity and shared gene content among these Phaseolus species will facilitate engineering climate adaptation in common bean, a key food security crop, and accelerate tepary bean improvement.

Suggested Citation

  • Samira Mafi Moghaddam & Atena Oladzad & Chushin Koh & Larissa Ramsay & John P. Hart & Sujan Mamidi & Genevieve Hoopes & Avinash Sreedasyam & Andrew Wiersma & Dongyan Zhao & Jane Grimwood & John P. Ham, 2021. "The tepary bean genome provides insight into evolution and domestication under heat stress," Nature Communications, Nature, vol. 12(1), pages 1-14, December.
  • Handle: RePEc:nat:natcom:v:12:y:2021:i:1:d:10.1038_s41467-021-22858-x
    DOI: 10.1038/s41467-021-22858-x
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    Cited by:

    1. Wai Kuan Ho & Alberto Stefano Tanzi & Fei Sang & Niki Tsoutsoura & Niraj Shah & Christopher Moore & Rahul Bhosale & Victoria Wright & Festo Massawe & Sean Mayes, 2024. "A genomic toolkit for winged bean Psophocarpus tetragonolobus," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    2. Dongya Wu & Enhui Shen & Bowen Jiang & Yu Feng & Wei Tang & Sangting Lao & Lei Jia & Han-Yang Lin & Lingjuan Xie & Xifang Weng & Chenfeng Dong & Qinghong Qian & Feng Lin & Haiming Xu & Huabing Lu & Lu, 2022. "Genomic insights into the evolution of Echinochloa species as weed and orphan crop," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    3. Edward K. Gilding & Mark A. Jackson & Linh T. T. Nguyen & Brett R. Hamilton & Katherine A. Farquharson & Wing L. Ho & Kuok Yap & Carolyn J. Hogg & Katherine Belov & David J. Craik, 2024. "Hijacking of N-fixing legume albumin-1 genes enables the cyclization and stabilization of defense peptides," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    4. Oluwaseyi Shorinola & Rose Marks & Peter Emmrich & Chris Jones & Damaris Odeny & Mark A. Chapman, 2024. "Integrative and inclusive genomics to promote the use of underutilised crops," Nature Communications, Nature, vol. 15(1), pages 1-4, December.

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