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The singularity response reveals entrainment properties of the plant circadian clock

Author

Listed:
  • Kosaku Masuda

    (Osaka Prefecture University
    Research Fellow of Japan Society for the Promotion of Science)

  • Isao T. Tokuda

    (Ritsumeikan University)

  • Norihito Nakamichi

    (Nagoya University)

  • Hirokazu Fukuda

    (Osaka Prefecture University)

Abstract

Circadian clocks allow organisms to synchronize their physiological processes to diurnal variations. A phase response curve allows researchers to understand clock entrainment by revealing how signals adjust clock genes differently according to the phase in which they are applied. Comprehensively investigating these curves is difficult, however, because of the cost of measuring them experimentally. Here we demonstrate that fundamental properties of the curve are recoverable from the singularity response, which is easily measured by applying a single stimulus to a cellular network in a desynchronized state (i.e. singularity). We show that the singularity response of Arabidopsis to light/dark and temperature stimuli depends on the properties of the phase response curve for these stimuli. The measured singularity responses not only allow the curves to be precisely reconstructed but also reveal organ-specific properties of the plant circadian clock. The method is not only simple and accurate, but also general and applicable to other coupled oscillator systems as long as the oscillators can be desynchronized. This simplified method may allow the entrainment properties of the circadian clock of both plants and other species in nature.

Suggested Citation

  • Kosaku Masuda & Isao T. Tokuda & Norihito Nakamichi & Hirokazu Fukuda, 2021. "The singularity response reveals entrainment properties of the plant circadian clock," Nature Communications, Nature, vol. 12(1), pages 1-7, December.
  • Handle: RePEc:nat:natcom:v:12:y:2021:i:1:d:10.1038_s41467-021-21167-7
    DOI: 10.1038/s41467-021-21167-7
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    Cited by:

    1. Kosaku Masuda & Naohiro Kon & Kosuke Iizuka & Yoshitaka Fukada & Takeshi Sakurai & Arisa Hirano, 2023. "Singularity response reveals entrainment properties in mammalian circadian clock," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    2. Gal Manella & Dan Aizik & Rona Aviram & Marina Golik & Gad Asher, 2021. "Circa-SCOPE: high-throughput live single-cell imaging method for analysis of circadian clock resetting," Nature Communications, Nature, vol. 12(1), pages 1-14, December.

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