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CHIMERA: Top-down model for hierarchical, overlapping and directed cluster structures in directed and weighted complex networks

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  • Franke, R.

Abstract

In many networks discovered in biology, medicine, neuroscience and other disciplines special properties like a certain degree distribution and hierarchical cluster structure (also called communities) can be observed as general organizing principles. Detecting the cluster structure of an unknown network promises to identify functional subdivisions, hierarchy and interactions on a mesoscale. It is not trivial choosing an appropriate detection algorithm because there are multiple network, cluster and algorithmic properties to be considered. Edges can be weighted and/or directed, clusters overlap or build a hierarchy in several ways. Algorithms differ not only in runtime, memory requirements but also in allowed network and cluster properties. They are based on a specific definition of what a cluster is, too. On the one hand, a comprehensive network creation model is needed to build a large variety of benchmark networks with different reasonable structures to compare algorithms. On the other hand, if a cluster structure is already known, it is desirable to separate effects of this structure from other network properties. This can be done with null model networks that mimic an observed cluster structure to improve statistics on other network features. A third important application is the general study of properties in networks with different cluster structures, possibly evolving over time.

Suggested Citation

  • Franke, R., 2016. "CHIMERA: Top-down model for hierarchical, overlapping and directed cluster structures in directed and weighted complex networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 461(C), pages 384-408.
    • Handle: RePEc:eee:phsmap:v:461:y:2016:i:c:p:384-408
    DOI: 10.1016/j.physa.2016.05.063
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    4. Scott Emmons & Stephen Kobourov & Mike Gallant & Katy Börner, 2016. "Analysis of Network Clustering Algorithms and Cluster Quality Metrics at Scale," PLOS ONE, Public Library of Science, vol. 11(7), pages 1-18, July.

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