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Analysis of amino acids network based on distance matrix

Author

Listed:
  • Ali, Tazid
  • Akhtar, Adil
  • Gohain, Nisha

Abstract

In this paper we have constructed a distance matrix of the amino acids. The distance is defined based on the relative evolutionary importance of the base position of the corresponding codons. From this distance matrix a network of the amino acids is obtained. We have argued that this network depicts the evolutionary pattern of the amino acids. To examine the relative importance of the amino acids with respect to this network we have discussed different measures of centrality. We have also investigated the correlation coefficients between different measures of centrality. Further we have explored clustering coefficient as well as degree of distribution.

Suggested Citation

  • Ali, Tazid & Akhtar, Adil & Gohain, Nisha, 2016. "Analysis of amino acids network based on distance matrix," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 452(C), pages 69-78.
    • Handle: RePEc:eee:phsmap:v:452:y:2016:i:c:p:69-78
    DOI: 10.1016/j.physa.2016.01.074
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    References listed on IDEAS

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    1. Kundu, Sudip, 2005. "Amino acid network within protein," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 346(1), pages 104-109.
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