A curated list of R packages for ecological niche modelling
Author
Abstract
Suggested Citation
DOI: 10.1016/j.ecolmodel.2022.110242
Download full text from publisher
As the access to this document is restricted, you may want to search for a different version of it.
References listed on IDEAS
- Rotllan-Puig, Xavier & Traveset, Anna, 2021. "Determining the minimal background area for species distribution models: MinBAR package," Ecological Modelling, Elsevier, vol. 439(C).
- Sillero, Neftalí & Arenas-Castro, Salvador & Enriquez‐Urzelai, Urtzi & Vale, Cândida Gomes & Sousa-Guedes, Diana & Martínez-Freiría, Fernando & Real, Raimundo & Barbosa, A.Márcia, 2021. "Want to model a species niche? A step-by-step guideline on correlative ecological niche modelling," Ecological Modelling, Elsevier, vol. 456(C).
- Toni Lyn Morelli & Adam B. Smith & Amanda N. Mancini & Elizabeth A. Balko & Cortni Borgerson & Rainer Dolch & Zachary Farris & Sarah Federman & Christopher D. Golden & Sheila M. Holmes & Mitchell Irwi, 2020. "The fate of Madagascar’s rainforest habitat," Nature Climate Change, Nature, vol. 10(1), pages 89-96, January.
- Freeman, Elizabeth A. & Moisen, Gretchen, 2008. "PresenceAbsence: An R Package for Presence Absence Analysis," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 23(i11).
- Sillero, Neftalí, 2011. "What does ecological modelling model? A proposed classification of ecological niche models based on their underlying methods," Ecological Modelling, Elsevier, vol. 222(8), pages 1343-1346.
- Baddeley, Adrian & Turner, Rolf, 2005. "spatstat: An R Package for Analyzing Spatial Point Patterns," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 12(i06).
Citations
Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
Cited by:
- Bondo, Kristin J. & Rosenberry, Christopher S. & Stainbrook, David & Walter, W. David, 2024. "Comparing risk of chronic wasting disease occurrence using Bayesian hierarchical spatial models and different surveillance types," Ecological Modelling, Elsevier, vol. 493(C).
- Rodrigues, Lucas dos Santos & Daudt, Nicholas Winterle & Cardoso, Luis Gustavo & Kinas, Paul Gerhard & Conesa, David & Pennino, Maria Grazia, 2023. "Species distribution modelling in the Southwestern Atlantic Ocean: A systematic review and trends," Ecological Modelling, Elsevier, vol. 486(C).
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Fernandez, Marc & Sillero, Neftali & Yesson, Chris, 2022. "To be or not to be: the role of absences in niche modelling for highly mobile species in dynamic marine environments," Ecological Modelling, Elsevier, vol. 471(C).
- Simon, Alois & Katzensteiner, Klaus & Wallentin, Gudrun, 2023. "The integration of hierarchical levels of scale in tree species distribution models of silver fir (Abies alba Mill.) and European beech (Fagus sylvatica L.) in mountain forests," Ecological Modelling, Elsevier, vol. 485(C).
- Arii, Ken & Caspersen, John P. & Jones, Trevor A. & Thomas, Sean C., 2008. "A selection harvesting algorithm for use in spatially explicit individual-based forest simulation models," Ecological Modelling, Elsevier, vol. 211(3), pages 251-266.
- Frank Davenport, 2017. "Estimating standard errors in spatial panel models with time varying spatial correlation," Papers in Regional Science, Wiley Blackwell, vol. 96, pages 155-177, March.
- Leandro, Camila & Jay-Robert, Pierre & Mériguet, Bruno & Houard, Xavier & Renner, Ian W., 2020. "Is my sdm good enough? insights from a citizen science dataset in a point process modeling framework," Ecological Modelling, Elsevier, vol. 438(C).
- Uzma Ashraf & Hassan Ali & Muhammad Nawaz Chaudry & Irfan Ashraf & Adila Batool & Zafeer Saqib, 2016. "Predicting the Potential Distribution of Olea ferruginea in Pakistan incorporating Climate Change by Using Maxent Model," Sustainability, MDPI, vol. 8(8), pages 1-11, July.
- Vijay Rajagopal & Gregory Bass & Cameron G Walker & David J Crossman & Amorita Petzer & Anthony Hickey & Ivo Siekmann & Masahiko Hoshijima & Mark H Ellisman & Edmund J Crampin & Christian Soeller, 2015. "Examination of the Effects of Heterogeneous Organization of RyR Clusters, Myofibrils and Mitochondria on Ca2+ Release Patterns in Cardiomyocytes," PLOS Computational Biology, Public Library of Science, vol. 11(9), pages 1-31, September.
- Christoph Lambio & Tillman Schmitz & Richard Elson & Jeffrey Butler & Alexandra Roth & Silke Feller & Nicolai Savaskan & Tobia Lakes, 2023. "Exploring the Spatial Relative Risk of COVID-19 in Berlin-Neukölln," IJERPH, MDPI, vol. 20(10), pages 1-22, May.
- Abdollah Jalilian, 2017. "Modelling and classification of species abundance: a case study in the Barro Colorado Island plot," Journal of Applied Statistics, Taylor & Francis Journals, vol. 44(13), pages 2401-2409, October.
- Éric Marcon & Florence Puech, 2023. "Mapping distributions in non-homogeneous space with distance-based methods [Cartographie des distributions dans un espace non homogène à l'aide de méthodes basées sur la distance]," Post-Print hal-04345149, HAL.
- Marchetto, Elisa & Da Re, Daniele & Tordoni, Enrico & Bazzichetto, Manuele & Zannini, Piero & Celebrin, Simone & Chieffallo, Ludovico & Malavasi, Marco & Rocchini, Duccio, 2023. "Testing the effect of sample prevalence and sampling methods on probability- and favourability-based SDMs," Ecological Modelling, Elsevier, vol. 477(C).
- Eric Marcon & Florence Puech, 2012. "A typology of distance-based measures of spatial concentration," Working Papers halshs-00679993, HAL.
- Davies, Tilman M. & Jones, Khair & Hazelton, Martin L., 2016. "Symmetric adaptive smoothing regimens for estimation of the spatial relative risk function," Computational Statistics & Data Analysis, Elsevier, vol. 101(C), pages 12-28.
- Akpoti, Komlavi & Groen, Thomas & Dossou-Yovo, Elliott & Kabo-bah, Amos T. & Zwart, Sander J., 2022. "Climate change-induced reduction in agricultural land suitability of West-Africa's inland valley landscapes," Agricultural Systems, Elsevier, vol. 200(C).
- Martín, Gerardo & Yáñez-Arenas, Carlos & Chiappa-Carrara, Xavier, 2022. "Discrepancies between point process models and environmental envelopes identify the niche centroid – geography configuration," Ecological Modelling, Elsevier, vol. 469(C).
- Roger S. Bivand, 2021. "Progress in the R ecosystem for representing and handling spatial data," Journal of Geographical Systems, Springer, vol. 23(4), pages 515-546, October.
- Andrew J Edelman, 2012. "Positive Interactions between Desert Granivores: Localized Facilitation of Harvester Ants by Kangaroo Rats," PLOS ONE, Public Library of Science, vol. 7(2), pages 1-9, February.
- Amanda S. Hering & Sean Bair, 2014. "Characterizing spatial and chronological target selection of serial offenders," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 63(1), pages 123-140, January.
- Nikhil Kaza & T. William Lester & Daniel A. Rodriguez, 2013. "The Spatio-temporal Clustering of Green Buildings in the United States," Urban Studies, Urban Studies Journal Limited, vol. 50(16), pages 3262-3282, December.
- Cory A. Toth & Todd E. Dennis & David E. Pattemore & Stuart Parsons, 2015. "Females as mobile resources: communal roosts promote the adoption of lek breeding in a temperate bat," Behavioral Ecology, International Society for Behavioral Ecology, vol. 26(4), pages 1156-1163.
More about this item
Keywords
Species distribution models; R language; R packages; Biodiversity modelling; Biogeography; Spatial analyses;All these keywords.
Statistics
Access and download statisticsCorrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:eee:ecomod:v:476:y:2023:i:c:s0304380022003404. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Catherine Liu (email available below). General contact details of provider: http://www.journals.elsevier.com/ecological-modelling .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.