IDEAS home Printed from https://ideas.repec.org/a/eee/ecomod/v248y2013icp184-202.html
   My bibliography  Save this article

Simulating brown trout demogenetics in a river/nursery brook system: The individual-based model DemGenTrout

Author

Listed:
  • Frank, Béatrice M.
  • Baret, Philippe V.

Abstract

The brown trout (Salmo trutta L.) is among the most biologically diverse vertebrate species. Human activities are threatening this biodiversity, and many endemic populations now face a medium-term risk of extinction. An individual-based model called DemGenTrout was developed to improve the management of these populations. The model was parameterized, optimized and validated with demographic, genetic, and environmental data collected over 7 years on the Lesse River drainage (Belgium). The sensitivity of the model to its parameters was analysed. The model was then used to assess how the demogenetics of a wild trout population might be affected by anthropogenic disturbances. From the sensitivity analysis, we found that modifications in survival and spawning parameters could lead to important changes in the demogenetics of the studied brown trout population. Two parameters were identified as the most influential in the DemGenTrout model, the survival rate of fry in the brook, and the mean of the spawner condition factor distribution. Two scenarios were simulated over 35 years and compared: (i) a barrier to upstream spawning migration, (ii) stocking with hatchery-reared trout during a 10-year period. Both of them appeared to have a strong short-term impact on the demogenetic structure of the wild trout population. The migration barrier mostly impacted abundance, while genetic issues arose when a significant number of stocked fish survived in the wild. Stocking also appeared to act on a longer time frame if hatchery and wild trout had similar survival and spawning probabilities.

Suggested Citation

  • Frank, Béatrice M. & Baret, Philippe V., 2013. "Simulating brown trout demogenetics in a river/nursery brook system: The individual-based model DemGenTrout," Ecological Modelling, Elsevier, vol. 248(C), pages 184-202.
    • Handle: RePEc:eee:ecomod:v:248:y:2013:i:c:p:184-202
    DOI: 10.1016/j.ecolmodel.2012.09.017
    as

    Download full text from publisher

    File URL: http://www.sciencedirect.com/science/article/pii/S0304380012004838
    Download Restriction: Full text for ScienceDirect subscribers only
    File URL: https://libkey.io/10.1016/j.ecolmodel.2012.09.017?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Piou, Cyril & Prévost, Etienne, 2012. "A demo-genetic individual-based model for Atlantic salmon populations: Model structure, parameterization and sensitivity," Ecological Modelling, Elsevier, vol. 231(C), pages 37-52.
    2. Cariboni, J. & Gatelli, D. & Liska, R. & Saltelli, A., 2007. "The role of sensitivity analysis in ecological modelling," Ecological Modelling, Elsevier, vol. 203(1), pages 167-182.
    3. Grimm, Volker & Berger, Uta & DeAngelis, Donald L. & Polhill, J. Gary & Giske, Jarl & Railsback, Steven F., 2010. "The ODD protocol: A review and first update," Ecological Modelling, Elsevier, vol. 221(23), pages 2760-2768.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Baggio, Rafael A. & Araujo, Sabrina B.L. & Ayllón, Daniel & Boeger, Walter A., 2018. "Dams cause genetic homogenization in populations of fish that present homing behavior: Evidence from a demogenetic individual-based model," Ecological Modelling, Elsevier, vol. 384(C), pages 209-220.
    2. Goto, Daisuke & Hamel, Martin J. & Hammen, Jeremy J. & Rugg, Matthew L. & Pegg, Mark A. & Forbes, Valery E., 2015. "Spatiotemporal variation in flow-dependent recruitment of long-lived riverine fish: Model development and evaluation," Ecological Modelling, Elsevier, vol. 296(C), pages 79-92.
    3. Rougier, Thibaud & Drouineau, Hilaire & Dumoulin, Nicolas & Faure, Thierry & Deffuant, Guillaume & Rochard, Eric & Lambert, Patrick, 2014. "The GR3D model, a tool to explore the Global Repositioning Dynamics of Diadromous fish Distribution," Ecological Modelling, Elsevier, vol. 283(C), pages 31-44.
    4. Ayllón, Daniel & Railsback, Steven F. & Vincenzi, Simone & Groeneveld, Jürgen & Almodóvar, Ana & Grimm, Volker, 2016. "InSTREAM-Gen: Modelling eco-evolutionary dynamics of trout populations under anthropogenic environmental change," Ecological Modelling, Elsevier, vol. 326(C), pages 36-53.
    5. Chudzińska, Magda & Ayllón, Daniel & Madsen, Jesper & Nabe-Nielsen, Jacob, 2016. "Discriminating between possible foraging decisions using pattern-oriented modelling: The case of pink-footed geese in Mid-Norway during their spring migration," Ecological Modelling, Elsevier, vol. 320(C), pages 299-315.
    6. Chudzinska, Magda & Dupont, Yoko L. & Nabe-Nielsen, Jacob & Maia, Kate P. & Henriksen, Marie V. & Rasmussen, Claus & Kissling, W. Daniel & Hagen, Melanie & Trøjelsgaard, Kristian, 2020. "Combining the strengths of agent-based modelling and network statistics to understand animal movement and interactions with resources: example from within-patch foraging decisions of bumblebees," Ecological Modelling, Elsevier, vol. 430(C).
    7. Radchuk, Viktoriia & Oppel, Steffen & Groeneveld, Jürgen & Grimm, Volker & Schtickzelle, Nicolas, 2016. "Simple or complex: Relative impact of data availability and model purpose on the choice of model types for population viability analyses," Ecological Modelling, Elsevier, vol. 323(C), pages 87-95.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Rougier, Thibaud & Drouineau, Hilaire & Dumoulin, Nicolas & Faure, Thierry & Deffuant, Guillaume & Rochard, Eric & Lambert, Patrick, 2014. "The GR3D model, a tool to explore the Global Repositioning Dynamics of Diadromous fish Distribution," Ecological Modelling, Elsevier, vol. 283(C), pages 31-44.
    2. Lorscheid, Iris & Meyer, Matthias, 2016. "Divide and conquer: Configuring submodels for valid and efficient analyses of complex simulation models," Ecological Modelling, Elsevier, vol. 326(C), pages 152-161.
    3. Kanapaux, William & Kiker, Gregory A., 2013. "Development and testing of an object-oriented model for adaptively managing human disturbance of least tern (Sternula antillarum) nesting habitat," Ecological Modelling, Elsevier, vol. 268(C), pages 64-77.
    4. Ayllón, Daniel & Railsback, Steven F. & Vincenzi, Simone & Groeneveld, Jürgen & Almodóvar, Ana & Grimm, Volker, 2016. "InSTREAM-Gen: Modelling eco-evolutionary dynamics of trout populations under anthropogenic environmental change," Ecological Modelling, Elsevier, vol. 326(C), pages 36-53.
    5. Zaatour, Wajdi & Marilleau, Nicolas & Giraudoux, Patrick & Martiny, Nadège & Amara, Abdesslem Ben Haj & Miled, Slimane Ben, 2021. "An agent-based model of a cutaneous leishmaniasis reservoir host, Meriones shawi," Ecological Modelling, Elsevier, vol. 443(C).
    6. Jager, Henriette I. & DeAngelis, Donald L., 2018. "The confluences of ideas leading to, and the flow of ideas emerging from, individual-based modeling of riverine fishes," Ecological Modelling, Elsevier, vol. 384(C), pages 341-352.
    7. Kruse, Stefan & Wieczorek, Mareike & Jeltsch, Florian & Herzschuh, Ulrike, 2016. "Treeline dynamics in Siberia under changing climates as inferred from an individual-based model for Larix," Ecological Modelling, Elsevier, vol. 338(C), pages 101-121.
    8. Radchuk, Viktoriia & Johst, Karin & Groeneveld, Jürgen & Grimm, Volker & Schtickzelle, Nicolas, 2013. "Behind the scenes of population viability modeling: Predicting butterfly metapopulation dynamics under climate change," Ecological Modelling, Elsevier, vol. 259(C), pages 62-73.
    9. Diouf, Esther Gnilane & Brévault, Thierry & Ndiaye, Saliou & Faye, Emile & Chailleux, Anaïs & Diatta, Paterne & Piou, Cyril, 2022. "An agent-based model to simulate the boosted Sterile Insect Technique for fruit fly management," Ecological Modelling, Elsevier, vol. 468(C).
    10. Goto, Daisuke & Hamel, Martin J. & Hammen, Jeremy J. & Rugg, Matthew L. & Pegg, Mark A. & Forbes, Valery E., 2015. "Spatiotemporal variation in flow-dependent recruitment of long-lived riverine fish: Model development and evaluation," Ecological Modelling, Elsevier, vol. 296(C), pages 79-92.
    11. Kautz, Markus & Schopf, Reinhard & Imron, Muhammad Ali, 2014. "Individual traits as drivers of spatial dispersal and infestation patterns in a host–bark beetle system," Ecological Modelling, Elsevier, vol. 273(C), pages 264-276.
    12. Baggio, Rafael A. & Araujo, Sabrina B.L. & Ayllón, Daniel & Boeger, Walter A., 2018. "Dams cause genetic homogenization in populations of fish that present homing behavior: Evidence from a demogenetic individual-based model," Ecological Modelling, Elsevier, vol. 384(C), pages 209-220.
    13. Francisco A. Buendia-Hernandez & Maria J. Ortiz Bevia & Francisco J. Alvarez-Garcia & Antonio Ruizde Elvira, 2022. "Sensitivity of a Dynamic Model of Air Traffic Emissions to Technological and Environmental Factors," IJERPH, MDPI, vol. 19(22), pages 1-17, November.
    14. Imron, Muhammad Ali & Gergs, Andre & Berger, Uta, 2012. "Structure and sensitivity analysis of individual-based predator–prey models," Reliability Engineering and System Safety, Elsevier, vol. 107(C), pages 71-81.
    15. Tardy, Olivia & Lenglos, Christophe & Lai, Sandra & Berteaux, Dominique & Leighton, Patrick A., 2023. "Rabies transmission in the Arctic: An agent-based model reveals the effects of broad-scale movement strategies on contact risk between Arctic foxes," Ecological Modelling, Elsevier, vol. 476(C).
    16. Vimercati, Giovanni & Hui, Cang & Davies, Sarah J. & Measey, G. John, 2017. "Integrating age structured and landscape resistance models to disentangle invasion dynamics of a pond-breeding anuran," Ecological Modelling, Elsevier, vol. 356(C), pages 104-116.
    17. Pelletier, Dominique & Mahevas, Stéphanie & Drouineau, Hilaire & Vermard, Youen & Thebaud, Olivier & Guyader, Olivier & Poussin, Benjamin, 2009. "Evaluation of the bioeconomic sustainability of multi-species multi-fleet fisheries under a wide range of policy options using ISIS-Fish," Ecological Modelling, Elsevier, vol. 220(7), pages 1013-1033.
    18. Jagadish, Arundhati & Dwivedi, Puneet & McEntire, Kira D. & Chandar, Mamta, 2019. "Agent-based modeling of “cleaner” cookstove adoption and woodfuel use: An integrative empirical approach," Forest Policy and Economics, Elsevier, vol. 106(C), pages 1-1.
    19. Frank H. Koch & Denys Yemshanov & Daniel W. McKenney & William D. Smith, 2009. "Evaluating Critical Uncertainty Thresholds in a Spatial Model of Forest Pest Invasion Risk," Risk Analysis, John Wiley & Sons, vol. 29(9), pages 1227-1241, September.
    20. Hinker, Jonas & Hemkendreis, Christian & Drewing, Emily & März, Steven & Hidalgo Rodríguez, Diego I. & Myrzik, Johanna M.A., 2017. "A novel conceptual model facilitating the derivation of agent-based models for analyzing socio-technical optimality gaps in the energy domain," Energy, Elsevier, vol. 137(C), pages 1219-1230.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:eee:ecomod:v:248:y:2013:i:c:p:184-202. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Catherine Liu (email available below). General contact details of provider: http://www.journals.elsevier.com/ecological-modelling .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.